Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03703

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
4,135,367	+		MIT1002_03702	0.68	-0.7
4,135,370	-		MIT1002_03702	0.68	+3.6
4,135,421	+		MIT1002_03702	0.70	-0.1
4,135,508	+		MIT1002_03702	0.74	+0.2
4,135,512	+		MIT1002_03702	0.75	-0.7
4,135,541	-		MIT1002_03702	0.76	+1.9
4,135,566	+		MIT1002_03702	0.77	-0.6
4,135,569	-		MIT1002_03702	0.77	-1.5
4,135,587	+		MIT1002_03702	0.78	+0.8
4,135,596	+		MIT1002_03702	0.79	+1.0
4,135,716	-		MIT1002_03702	0.84	+0.5
4,135,722	+		MIT1002_03702	0.84	+1.6
4,135,792	+		MIT1002_03702	0.88	-0.5
4,135,792	+		MIT1002_03702	0.88	-1.3
4,135,792	+		MIT1002_03702	0.88	-2.1
4,135,792	+		MIT1002_03702	0.88	-0.6
4,135,800	+		MIT1002_03702	0.88	+0.4
4,135,800	-		MIT1002_03702	0.88	-0.0
4,135,800	-		MIT1002_03702	0.88	+0.2
4,135,805	+		MIT1002_03702	0.88	+0.5
4,135,831	-		MIT1002_03702	0.90	+0.4
4,135,864	+				-0.3
4,135,879	+				-0.3
4,135,883	-				+0.2
4,135,895	-				-0.2
4,135,946	+				-0.5
4,135,946	-				-0.6
4,135,972	-				-1.1
4,136,014	+				+1.1
4,136,022	+				-0.7
4,136,028	-				+1.7
4,136,103	-				+0.2
4,136,137	+				-0.2
4,136,137	+				-0.3
4,136,137	+				-2.6
4,136,145	-				-0.3
4,136,145	-				+1.0
4,136,145	-				+1.5
4,136,145	-				+1.0
4,136,156	+				-0.6
4,136,157	+				+1.7
4,136,252	+				+0.8
4,136,260	-				+0.5
4,136,319	+				-0.7
4,136,355	+				-0.7
4,136,535	+		MIT1002_03703	0.25	-0.4
4,136,543	-		MIT1002_03703	0.26	-1.6
4,136,543	-		MIT1002_03703	0.26	+0.1
4,136,555	-		MIT1002_03703	0.28	+2.4
4,136,714	-		MIT1002_03703	0.51	-1.5
4,136,770	+		MIT1002_03703	0.59	-0.6
4,136,805	+		MIT1002_03703	0.64	-0.1
4,136,815	+		MIT1002_03703	0.66	+0.8
4,136,825	-		MIT1002_03703	0.67	+0.3
4,136,825	-		MIT1002_03703	0.67	-0.4
4,136,828	-		MIT1002_03703	0.68	-1.0
4,136,836	-		MIT1002_03703	0.69	+1.0
4,136,875	-		MIT1002_03703	0.75	-1.2
4,136,894	+		MIT1002_03703	0.77	-0.4
4,136,897	-		MIT1002_03703	0.78	+1.1
4,136,902	-		MIT1002_03703	0.78	+0.3
4,136,902	-		MIT1002_03703	0.78	+1.3
4,136,906	+		MIT1002_03703	0.79	+2.3
4,136,906	+		MIT1002_03703	0.79	+1.1
4,136,906	+		MIT1002_03703	0.79	+0.9
4,136,906	+		MIT1002_03703	0.79	-1.5
4,136,906	+		MIT1002_03703	0.79	+0.1
4,136,907	-		MIT1002_03703	0.79	+2.4
4,136,913	-		MIT1002_03703	0.80	-0.4
4,136,914	-		MIT1002_03703	0.80	-0.0
4,136,914	-		MIT1002_03703	0.80	+0.7
4,136,914	-		MIT1002_03703	0.80	-0.1
4,136,914	-		MIT1002_03703	0.80	-1.9
4,136,914	-		MIT1002_03703	0.80	+0.2
4,136,914	-		MIT1002_03703	0.80	-0.7
4,136,928	+		MIT1002_03703	0.82	-0.9
4,136,933	+		MIT1002_03703	0.83	-0.4
4,136,950	-		MIT1002_03703	0.85	-0.6
4,136,950	-		MIT1002_03703	0.85	-0.0
4,136,958	-		MIT1002_03703	0.87	+1.6
4,137,092	+				-1.0
4,137,098	+				-1.4
4,137,100	+				+0.7
4,137,100	+				+1.4
4,137,118	+				-0.6
4,137,141	-				-1.3
4,137,175	-				+0.2
4,137,212	+				-0.0
4,137,212	+				-0.9
4,137,217	-				-0.7
4,137,220	-				-0.3
4,137,220	-				-0.7
4,137,290	-		MIT1002_03704	0.10	-1.1
4,137,479	+		MIT1002_03704	0.27	-0.8
4,137,479	+		MIT1002_03704	0.27	-0.3
4,137,506	+		MIT1002_03704	0.30	-1.8
4,137,542	+		MIT1002_03704	0.33	-0.9
4,137,559	+		MIT1002_03704	0.35	+0.8
4,137,559	+		MIT1002_03704	0.35	+1.1
4,137,559	+		MIT1002_03704	0.35	+0.2
4,137,559	+		MIT1002_03704	0.35	+2.6
4,137,559	+		MIT1002_03704	0.35	-1.3
4,137,559	+		MIT1002_03704	0.35	-0.3
4,137,567	-		MIT1002_03704	0.35	-0.3
4,137,567	-		MIT1002_03704	0.35	+1.1
4,137,567	-		MIT1002_03704	0.35	-0.3
4,137,567	-		MIT1002_03704	0.35	-0.3
4,137,567	-		MIT1002_03704	0.35	+0.8
4,137,567	-		MIT1002_03704	0.35	+0.3
4,137,603	+		MIT1002_03704	0.39	-1.1
4,137,638	-		MIT1002_03704	0.42	-0.8
4,137,646	+		MIT1002_03704	0.43	-1.0
4,137,716	+		MIT1002_03704	0.49	-1.5
4,137,718	+		MIT1002_03704	0.49	-0.7
4,137,725	-		MIT1002_03704	0.50	+0.3
4,137,758	+		MIT1002_03704	0.53	-0.1
4,137,769	+		MIT1002_03704	0.54	-1.7
4,137,769	+		MIT1002_03704	0.54	-1.6
4,137,775	+		MIT1002_03704	0.54	+0.6
4,137,777	-		MIT1002_03704	0.54	-0.5
4,137,828	+		MIT1002_03704	0.59	-2.1
4,137,828	+		MIT1002_03704	0.59	+0.6
4,137,975	+		MIT1002_03704	0.72	-1.1
4,137,990	+		MIT1002_03704	0.74	+0.3
4,137,996	-		MIT1002_03704	0.74	-0.1
4,138,010	+		MIT1002_03704	0.76	+0.6
4,138,011	-		MIT1002_03704	0.76	-1.5
4,138,026	-		MIT1002_03704	0.77	+0.6
4,138,041	-		MIT1002_03704	0.78	+1.3