Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03684 and MIT1002_03685 are separated by 0 nucleotides MIT1002_03685 and MIT1002_03686 are separated by 95 nucleotides MIT1002_03686 and MIT1002_03687 are separated by 224 nucleotides MIT1002_03687 and MIT1002_03688 are separated by 179 nucleotides
MIT1002_03684: MIT1002_03684 - hypothetical protein, at 4,117,325 to 4,117,903
_03684
MIT1002_03685: MIT1002_03685 - putative antibiotic transporter, at 4,117,904 to 4,118,506
_03685
MIT1002_03686: MIT1002_03686 - hypothetical protein, at 4,118,602 to 4,118,718
_03686
MIT1002_03687: MIT1002_03687 - hypothetical protein, at 4,118,943 to 4,119,125
_03687
MIT1002_03688: MIT1002_03688 - Peptidase B, at 4,119,305 to 4,120,588
_03688
Position (kb) 4118
4119 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4117.629 kb on + strand, within MIT1002_03684 at 4117.659 kb on + strand, within MIT1002_03684 at 4117.659 kb on + strand, within MIT1002_03684 at 4117.667 kb on - strand, within MIT1002_03684 at 4117.687 kb on + strand, within MIT1002_03684 at 4117.808 kb on - strand, within MIT1002_03684 at 4117.815 kb on + strand, within MIT1002_03684 at 4117.855 kb on + strand at 4117.963 kb on - strand at 4117.979 kb on + strand, within MIT1002_03685 at 4117.979 kb on + strand, within MIT1002_03685 at 4118.005 kb on + strand, within MIT1002_03685 at 4118.122 kb on - strand, within MIT1002_03685 at 4118.152 kb on + strand, within MIT1002_03685 at 4118.161 kb on - strand, within MIT1002_03685 at 4118.220 kb on + strand, within MIT1002_03685 at 4118.290 kb on + strand, within MIT1002_03685 at 4118.435 kb on + strand, within MIT1002_03685 at 4118.435 kb on + strand, within MIT1002_03685 at 4118.518 kb on + strand at 4118.523 kb on + strand at 4118.530 kb on + strand at 4118.538 kb on - strand at 4118.544 kb on - strand at 4118.561 kb on - strand at 4118.633 kb on + strand, within MIT1002_03686 at 4118.641 kb on - strand, within MIT1002_03686 at 4118.821 kb on + strand at 4118.843 kb on - strand at 4118.877 kb on + strand at 4118.964 kb on - strand, within MIT1002_03687 at 4119.061 kb on - strand, within MIT1002_03687 at 4119.071 kb on - strand, within MIT1002_03687 at 4119.117 kb on - strand at 4119.219 kb on + strand at 4119.222 kb on + strand at 4119.277 kb on + strand at 4119.309 kb on + strand at 4119.355 kb on + strand at 4119.400 kb on - strand at 4119.426 kb on - strand at 4119.507 kb on - strand, within MIT1002_03688 at 4119.526 kb on + strand, within MIT1002_03688 at 4119.534 kb on - strand, within MIT1002_03688 at 4119.541 kb on - strand, within MIT1002_03688 at 4119.630 kb on + strand, within MIT1002_03688 at 4119.649 kb on + strand, within MIT1002_03688 at 4119.649 kb on + strand, within MIT1002_03688 at 4119.657 kb on - strand, within MIT1002_03688 at 4119.657 kb on - strand, within MIT1002_03688
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 4,117,629 + MIT1002_03684 0.53 +0.8 4,117,659 + MIT1002_03684 0.58 +0.6 4,117,659 + MIT1002_03684 0.58 -0.6 4,117,667 - MIT1002_03684 0.59 +0.8 4,117,687 + MIT1002_03684 0.63 -0.6 4,117,808 - MIT1002_03684 0.83 -1.4 4,117,815 + MIT1002_03684 0.85 +0.5 4,117,855 + -1.2 4,117,963 - -0.5 4,117,979 + MIT1002_03685 0.12 +0.7 4,117,979 + MIT1002_03685 0.12 +0.6 4,118,005 + MIT1002_03685 0.17 -0.6 4,118,122 - MIT1002_03685 0.36 -1.4 4,118,152 + MIT1002_03685 0.41 -0.4 4,118,161 - MIT1002_03685 0.43 +2.6 4,118,220 + MIT1002_03685 0.52 +0.4 4,118,290 + MIT1002_03685 0.64 -2.1 4,118,435 + MIT1002_03685 0.88 -0.6 4,118,435 + MIT1002_03685 0.88 -1.6 4,118,518 + +1.6 4,118,523 + +1.1 4,118,530 + +0.1 4,118,538 - +1.5 4,118,544 - -1.2 4,118,561 - +0.8 4,118,633 + MIT1002_03686 0.26 -0.0 4,118,641 - MIT1002_03686 0.33 -1.9 4,118,821 + -0.1 4,118,843 - +0.3 4,118,877 + +0.7 4,118,964 - MIT1002_03687 0.11 -0.2 4,119,061 - MIT1002_03687 0.64 +0.1 4,119,071 - MIT1002_03687 0.70 +1.6 4,119,117 - +0.5 4,119,219 + -0.5 4,119,222 + -0.1 4,119,277 + +1.0 4,119,309 + -0.9 4,119,355 + +0.7 4,119,400 - -0.2 4,119,426 - -0.7 4,119,507 - MIT1002_03688 0.16 -0.6 4,119,526 + MIT1002_03688 0.17 +1.0 4,119,534 - MIT1002_03688 0.18 +1.6 4,119,541 - MIT1002_03688 0.18 +0.9 4,119,630 + MIT1002_03688 0.25 +0.7 4,119,649 + MIT1002_03688 0.27 -0.3 4,119,649 + MIT1002_03688 0.27 +0.7 4,119,657 - MIT1002_03688 0.27 -0.7 4,119,657 - MIT1002_03688 0.27 +0.7
Or see this region's nucleotide sequence