Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03683

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
4,116,519	-				-0.4
4,116,551	+				+0.8
4,116,602	+		MIT1002_03683	0.15	-1.5
4,116,642	-		MIT1002_03683	0.21	-0.1
4,116,668	+		MIT1002_03683	0.25	-1.9
4,116,679	+		MIT1002_03683	0.26	-0.6
4,116,694	+		MIT1002_03683	0.28	+0.0
4,116,697	+		MIT1002_03683	0.29	-2.1
4,116,697	+		MIT1002_03683	0.29	-0.9
4,116,699	-		MIT1002_03683	0.29	-0.6
4,116,706	-		MIT1002_03683	0.30	-0.7
4,116,707	-		MIT1002_03683	0.30	-0.0
4,116,723	-		MIT1002_03683	0.33	-0.3
4,116,743	+		MIT1002_03683	0.35	-0.6
4,116,751	-		MIT1002_03683	0.37	+0.6
4,116,751	-		MIT1002_03683	0.37	+1.6
4,116,827	+		MIT1002_03683	0.48	+1.4
4,116,827	-		MIT1002_03683	0.48	-0.6
4,116,835	-		MIT1002_03683	0.49	-0.8
4,116,835	-		MIT1002_03683	0.49	+1.0
4,116,835	-		MIT1002_03683	0.49	-0.3
4,116,835	-		MIT1002_03683	0.49	-0.0
4,116,855	+		MIT1002_03683	0.52	-1.6
4,116,886	+		MIT1002_03683	0.56	-0.9
4,116,931	+		MIT1002_03683	0.62	+1.2
4,116,946	-		MIT1002_03683	0.65	-0.4
4,117,035	+		MIT1002_03683	0.77	-0.3
4,117,107	-		MIT1002_03683	0.88	-0.9
4,117,199	+				+0.9
4,117,207	-				+0.7
4,117,207	-				-0.1
4,117,223	-				-1.0
4,117,230	+				+0.0
4,117,231	-				+0.2
4,117,232	-				+0.3
4,117,248	+				-0.3
4,117,248	+				-1.6
4,117,376	-				-0.6
4,117,411	+		MIT1002_03684	0.15	+0.6
4,117,452	+		MIT1002_03684	0.22	+1.2
4,117,522	-		MIT1002_03684	0.34	-0.4
4,117,524	-		MIT1002_03684	0.34	-0.1
4,117,549	+		MIT1002_03684	0.39	-1.0
4,117,557	-		MIT1002_03684	0.40	-1.6
4,117,595	+		MIT1002_03684	0.47	-1.6
4,117,629	+		MIT1002_03684	0.53	+0.8
4,117,659	+		MIT1002_03684	0.58	+0.6
4,117,659	+		MIT1002_03684	0.58	-0.6
4,117,667	-		MIT1002_03684	0.59	+0.8
4,117,687	+		MIT1002_03684	0.63	-0.6
4,117,808	-		MIT1002_03684	0.83	-1.4
4,117,815	+		MIT1002_03684	0.85	+0.5
4,117,855	+				-1.2
4,117,963	-				-0.5
4,117,979	+		MIT1002_03685	0.12	+0.7
4,117,979	+		MIT1002_03685	0.12	+0.6
4,118,005	+		MIT1002_03685	0.17	-0.6
4,118,122	-		MIT1002_03685	0.36	-1.4
4,118,152	+		MIT1002_03685	0.41	-0.4
4,118,161	-		MIT1002_03685	0.43	+2.6