Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03503

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
3,913,021	-				-0.3
3,913,083	+				-1.2
3,913,083	+				+2.5
3,913,091	-				-0.4
3,913,091	-				-0.2
3,913,259	-				-1.1
3,913,266	+				-1.4
3,913,266	+				+1.2
3,913,266	+				-2.1
3,913,266	+				+0.2
3,913,266	+				+1.9
3,913,266	+				+1.2
3,913,266	+				+0.2
3,913,266	+				-0.9
3,913,266	+				+1.4
3,913,266	+				-1.0
3,913,266	+				-2.3
3,913,274	-				-0.1
3,913,274	-				+0.3
3,913,314	+				-0.3
3,913,379	+				+0.9
3,913,400	+		MIT1002_03502	0.13	-0.5
3,913,462	-		MIT1002_03502	0.25	-0.0
3,913,499	-		MIT1002_03502	0.32	-0.5
3,913,523	-		MIT1002_03502	0.37	+1.3
3,913,642	+		MIT1002_03502	0.60	+0.5
3,913,682	-		MIT1002_03502	0.68	+0.6
3,913,713	-		MIT1002_03502	0.74	+0.9
3,913,720	+		MIT1002_03502	0.76	-1.8
3,913,837	+				+1.1
3,913,879	+				-0.4
3,913,925	-				-0.9
3,913,958	-				+2.4
3,913,978	+				+1.6
3,914,023	-				+1.8
3,914,023	-				+0.4
3,914,023	-				+0.1
3,914,067	-		MIT1002_03503	0.21	+0.8
3,914,356	+				+0.9
3,914,364	-				+0.7
3,914,370	+				-0.4
3,914,370	+				-0.9
3,914,378	-				-0.2
3,914,378	-				+0.6
3,914,434	+				+0.2
3,914,436	+				+1.4
3,914,436	+				+0.1
3,914,456	+				+0.3
3,914,464	-				+2.6
3,914,579	+				+0.8
3,914,586	+				-0.4
3,914,594	-				-1.2
3,914,598	+				-1.1
3,914,598	+				-1.3
3,914,598	+				-0.2
3,914,613	+				+1.7
3,914,672	-				-0.5
3,914,769	-		MIT1002_03504	0.15	-2.1
3,914,785	+		MIT1002_03504	0.17	+0.5
3,914,785	+		MIT1002_03504	0.17	-0.9
3,914,790	+		MIT1002_03504	0.17	-0.9
3,914,840	-		MIT1002_03504	0.23	-2.0
3,914,840	-		MIT1002_03504	0.23	-0.8
3,914,921	+		MIT1002_03504	0.31	-1.2
3,914,921	+		MIT1002_03504	0.31	+0.1
3,914,958	-		MIT1002_03504	0.35	+1.2
3,914,972	+		MIT1002_03504	0.36	-1.3
3,914,972	+		MIT1002_03504	0.36	+0.0
3,914,972	+		MIT1002_03504	0.36	+0.6
3,914,980	-		MIT1002_03504	0.37	+0.2
3,914,980	-		MIT1002_03504	0.37	-2.2
3,914,982	+		MIT1002_03504	0.37	-0.7
3,914,982	+		MIT1002_03504	0.37	-0.1
3,914,982	-		MIT1002_03504	0.37	+0.1
3,914,982	-		MIT1002_03504	0.37	+0.6
3,914,982	-		MIT1002_03504	0.37	-1.1
3,914,982	-		MIT1002_03504	0.37	-0.7
3,915,059	+		MIT1002_03504	0.45	-0.5
3,915,059	+		MIT1002_03504	0.45	-1.3
3,915,059	+		MIT1002_03504	0.45	-0.3
3,915,059	+		MIT1002_03504	0.45	+0.1
3,915,067	-		MIT1002_03504	0.46	-0.1
3,915,067	-		MIT1002_03504	0.46	+0.4
3,915,105	+		MIT1002_03504	0.50	-0.2
3,915,130	+		MIT1002_03504	0.52	-0.2
3,915,138	+		MIT1002_03504	0.53	-1.3
3,915,146	-		MIT1002_03504	0.54	-1.2
3,915,146	-		MIT1002_03504	0.54	-0.3
3,915,146	-		MIT1002_03504	0.54	+0.7
3,915,174	+		MIT1002_03504	0.57	-0.2
3,915,192	-		MIT1002_03504	0.58	-0.1
3,915,247	+		MIT1002_03504	0.64	+0.5
3,915,254	+		MIT1002_03504	0.65	+1.2
3,915,254	+		MIT1002_03504	0.65	-1.3
3,915,262	-		MIT1002_03504	0.66	-1.8
3,915,262	-		MIT1002_03504	0.66	-1.2
3,915,262	-		MIT1002_03504	0.66	-1.1