Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03176

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
3,537,228	-				+0.0
3,537,268	-		MIT1002_03175	0.13	+0.6
3,537,306	-		MIT1002_03175	0.18	-1.6
3,537,328	+		MIT1002_03175	0.21	-0.8
3,537,333	+		MIT1002_03175	0.22	-0.2
3,537,354	+		MIT1002_03175	0.25	-0.4
3,537,379	+		MIT1002_03175	0.28	+0.6
3,537,379	-		MIT1002_03175	0.28	-0.7
3,537,379	-		MIT1002_03175	0.28	-0.4
3,537,429	+		MIT1002_03175	0.35	-0.9
3,537,502	+		MIT1002_03175	0.46	-0.4
3,537,552	-		MIT1002_03175	0.53	+2.4
3,537,644	-		MIT1002_03175	0.66	+2.6
3,537,644	-		MIT1002_03175	0.66	-0.1
3,537,695	+		MIT1002_03175	0.73	+0.9
3,537,717	-		MIT1002_03175	0.76	+0.0
3,537,719	+		MIT1002_03175	0.77	+0.4
3,537,740	+		MIT1002_03175	0.80	+1.2
3,537,889	-				+1.2
3,537,961	+				-0.2
3,537,969	-				+0.4
3,538,012	+				+0.9
3,538,012	+				-1.4
3,538,022	+				+1.0
3,538,073	+				-0.1
3,538,083	-				-0.3
3,538,153	+				+0.5
3,538,214	+				+0.9
3,538,245	-				-1.5
3,538,268	+		MIT1002_03176	0.11	-0.8
3,538,281	+		MIT1002_03176	0.12	-0.8
3,538,318	+		MIT1002_03176	0.15	+3.1
3,538,318	+		MIT1002_03176	0.15	+0.3
3,538,318	+		MIT1002_03176	0.15	+1.2
3,538,320	-		MIT1002_03176	0.15	-1.3
3,538,325	+		MIT1002_03176	0.16	-0.6
3,538,326	-		MIT1002_03176	0.16	+1.1
3,538,326	-		MIT1002_03176	0.16	-0.8
3,538,326	-		MIT1002_03176	0.16	-2.5
3,538,326	-		MIT1002_03176	0.16	-0.9
3,538,326	-		MIT1002_03176	0.16	-0.6
3,538,459	-		MIT1002_03176	0.27	-0.7
3,538,477	-		MIT1002_03176	0.29	+2.1
3,538,550	+		MIT1002_03176	0.35	+2.5
3,538,563	-		MIT1002_03176	0.36	+1.4
3,538,613	-		MIT1002_03176	0.40	-1.0
3,538,644	+		MIT1002_03176	0.43	+1.4
3,538,644	+		MIT1002_03176	0.43	+0.1
3,538,659	+		MIT1002_03176	0.44	+1.0
3,538,684	+		MIT1002_03176	0.46	+0.2
3,538,917	+		MIT1002_03176	0.65	-0.1
3,538,978	+		MIT1002_03176	0.70	-0.4
3,538,978	+		MIT1002_03176	0.70	+0.6
3,538,978	+		MIT1002_03176	0.70	-1.7
3,538,978	+		MIT1002_03176	0.70	-0.5
3,538,978	+		MIT1002_03176	0.70	+0.8
3,538,978	+		MIT1002_03176	0.70	+0.6
3,538,986	-		MIT1002_03176	0.71	-0.1
3,538,986	-		MIT1002_03176	0.71	-2.4
3,538,986	-		MIT1002_03176	0.71	-0.5
3,538,986	-		MIT1002_03176	0.71	-0.8
3,538,986	-		MIT1002_03176	0.71	+1.4
3,538,990	+		MIT1002_03176	0.71	+1.5
3,539,022	+		MIT1002_03176	0.74	+1.2
3,539,035	-		MIT1002_03176	0.75	+0.1
3,539,041	-		MIT1002_03176	0.76	-1.2
3,539,124	+		MIT1002_03176	0.83	-0.0
3,539,278	-				-0.9
3,539,294	+				-2.1
3,539,294	+				-0.8
3,539,302	-				+0.8
3,539,381	+				+0.6