Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02957

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
3,286,490	+				+0.6
3,286,490	+				-0.0
3,286,490	+				+0.1
3,286,490	+				+2.4
3,286,490	+				+1.9
3,286,490	+				-0.9
3,286,498	-				+1.4
3,286,498	-				-1.0
3,286,498	-				+0.7
3,286,498	-				+1.1
3,286,498	-				+1.4
3,286,498	-				-0.4
3,286,535	+		MIT1002_02956	0.11	-0.1
3,286,547	+		MIT1002_02956	0.12	-0.2
3,286,567	-		MIT1002_02956	0.14	-0.6
3,286,615	+		MIT1002_02956	0.19	-1.3
3,286,620	+		MIT1002_02956	0.20	-1.0
3,286,629	-		MIT1002_02956	0.21	-0.4
3,286,633	+		MIT1002_02956	0.21	-0.1
3,286,633	+		MIT1002_02956	0.21	+0.2
3,286,641	-		MIT1002_02956	0.22	-6.4
3,286,698	+		MIT1002_02956	0.28	-0.6
3,286,708	+		MIT1002_02956	0.29	-0.2
3,286,716	-		MIT1002_02956	0.30	+1.6
3,286,725	+		MIT1002_02956	0.31	+0.2
3,286,725	+		MIT1002_02956	0.31	-0.1
3,286,729	-		MIT1002_02956	0.32	-1.2
3,286,729	-		MIT1002_02956	0.32	+1.0
3,286,796	-		MIT1002_02956	0.39	+0.3
3,286,838	-		MIT1002_02956	0.43	+1.2
3,286,845	+		MIT1002_02956	0.44	-0.1
3,286,853	-		MIT1002_02956	0.45	-0.3
3,286,884	+		MIT1002_02956	0.48	-0.2
3,286,927	-		MIT1002_02956	0.53	-0.0
3,287,019	-		MIT1002_02956	0.63	+0.3
3,287,073	-		MIT1002_02956	0.68	+12.5
3,287,103	+		MIT1002_02956	0.72	+0.4
3,287,202	+		MIT1002_02956	0.82	+1.2
3,287,302	-				+1.0
3,287,320	-				-1.7
3,287,335	-				+2.6
3,287,480	-				-0.0
3,287,480	-				+0.4
3,287,544	+				-0.4
3,287,549	+		MIT1002_02957	0.10	-0.5
3,287,552	-		MIT1002_02957	0.11	+0.6
3,287,565	-		MIT1002_02957	0.12	+2.1
3,287,570	-		MIT1002_02957	0.13	-0.3
3,287,572	-		MIT1002_02957	0.13	-0.5
3,287,626	+		MIT1002_02957	0.20	+0.5
3,287,626	+		MIT1002_02957	0.20	-0.7
3,287,634	-		MIT1002_02957	0.21	+0.2
3,287,634	-		MIT1002_02957	0.21	-0.1
3,287,646	-		MIT1002_02957	0.22	-1.3
3,287,646	-		MIT1002_02957	0.22	+1.5
3,287,674	+		MIT1002_02957	0.25	+1.2
3,287,674	+		MIT1002_02957	0.25	+0.9
3,287,681	+		MIT1002_02957	0.26	+0.1
3,287,681	+		MIT1002_02957	0.26	+0.9
3,287,689	+		MIT1002_02957	0.27	+0.6
3,287,689	-		MIT1002_02957	0.27	-2.3
3,287,697	-		MIT1002_02957	0.28	+0.5
3,287,727	+		MIT1002_02957	0.32	-0.7
3,287,727	+		MIT1002_02957	0.32	+1.2
3,287,740	+		MIT1002_02957	0.33	+0.5
3,287,749	-		MIT1002_02957	0.35	-0.5
3,287,787	+		MIT1002_02957	0.39	-0.5
3,287,869	-		MIT1002_02957	0.49	+0.1
3,287,905	+		MIT1002_02957	0.54	+0.2
3,287,913	-		MIT1002_02957	0.55	+2.0
3,287,983	-		MIT1002_02957	0.63	+1.4
3,287,983	-		MIT1002_02957	0.63	-1.9
3,288,007	+		MIT1002_02957	0.66	+0.2
3,288,007	+		MIT1002_02957	0.66	-0.8
3,288,007	+		MIT1002_02957	0.66	+0.6
3,288,015	-		MIT1002_02957	0.67	+0.1
3,288,015	-		MIT1002_02957	0.67	+0.3
3,288,015	-		MIT1002_02957	0.67	+1.7
3,288,030	+		MIT1002_02957	0.69	+1.0
3,288,030	+		MIT1002_02957	0.69	+0.4
3,288,049	+		MIT1002_02957	0.71	+0.0
3,288,057	-		MIT1002_02957	0.72	-0.6
3,288,069	+		MIT1002_02957	0.73	+1.1
3,288,069	+		MIT1002_02957	0.73	-0.4
3,288,077	-		MIT1002_02957	0.74	+0.7
3,288,146	+		MIT1002_02957	0.83	+0.6
3,288,172	+		MIT1002_02957	0.86	-1.3
3,288,191	-		MIT1002_02957	0.88	+0.0
3,288,375	+				+0.3
3,288,385	+				+2.6
3,288,432	+				+1.6
3,288,476	-				+1.4
3,288,477	+				-2.3
3,288,550	-				+0.8
3,288,568	-				+0.7
3,288,569	+				+0.8
3,288,577	-				+0.4
3,288,577	-				-0.1
3,288,581	+				+0.3
3,288,587	-				+0.1
3,288,589	+				-1.3
3,288,597	-				-1.4
3,288,703	-		MIT1002_02958	0.19	-0.5
3,288,734	-		MIT1002_02958	0.22	-3.0
3,288,762	+		MIT1002_02958	0.25	+1.4
3,288,770	-		MIT1002_02958	0.25	-0.7
3,288,853	-		MIT1002_02958	0.33	-0.8
3,288,885	+		MIT1002_02958	0.36	-1.4
3,288,914	-		MIT1002_02958	0.38	+1.1
3,288,914	-		MIT1002_02958	0.38	-0.7
3,288,985	-		MIT1002_02958	0.44	+0.4
3,289,022	+		MIT1002_02958	0.48	-0.5
3,289,042	-		MIT1002_02958	0.50	-0.6
3,289,058	-		MIT1002_02958	0.51	-1.4
3,289,147	+		MIT1002_02958	0.59	-0.5
3,289,149	-		MIT1002_02958	0.59	+0.1
3,289,160	-		MIT1002_02958	0.60	+1.0
3,289,214	-		MIT1002_02958	0.65	-1.2
3,289,222	+		MIT1002_02958	0.66	+1.0
3,289,232	-		MIT1002_02958	0.66	+0.8
3,289,253	+		MIT1002_02958	0.68	-0.9