Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02735

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
3,032,940	-				+1.4
3,033,035	+				+1.2
3,033,147	+		MIT1002_02733	0.26	+0.4
3,033,160	-		MIT1002_02733	0.31	-1.4
3,033,274	+		MIT1002_02733	0.75	-0.2
3,033,317	-				-1.6
3,033,453	-				-1.5
3,033,519	+		MIT1002_02734	0.21	-1.5
3,033,527	-		MIT1002_02734	0.23	-0.1
3,033,547	+		MIT1002_02734	0.27	+0.9
3,033,547	+		MIT1002_02734	0.27	+1.3
3,033,547	+		MIT1002_02734	0.27	+0.8
3,033,555	-		MIT1002_02734	0.29	-0.1
3,033,730	+		MIT1002_02734	0.67	-0.8
3,033,740	+		MIT1002_02734	0.69	+0.5
3,033,744	+		MIT1002_02734	0.70	+0.1
3,033,749	+		MIT1002_02734	0.71	+0.8
3,033,749	+		MIT1002_02734	0.71	+1.4
3,033,749	+		MIT1002_02734	0.71	-0.4
3,033,749	+		MIT1002_02734	0.71	+0.4
3,033,752	-		MIT1002_02734	0.71	-0.7
3,033,752	-		MIT1002_02734	0.71	-1.3
3,033,757	-		MIT1002_02734	0.72	+0.0
3,033,757	-		MIT1002_02734	0.72	-2.2
3,033,757	-		MIT1002_02734	0.72	+0.4
3,033,757	-		MIT1002_02734	0.72	-0.5
3,033,762	-		MIT1002_02734	0.74	+0.7
3,033,843	-				+0.1
3,033,908	+				-0.2
3,033,908	-				-0.4
3,034,006	-				+0.9
3,034,039	-				+0.1
3,034,048	+				+1.8
3,034,048	+				-0.2
3,034,139	-				-0.2
3,034,187	+				-0.4
3,034,222	-				-1.1
3,034,233	+				+1.7
3,034,241	-				+0.5
3,034,241	-				+0.9
3,034,344	-		MIT1002_02735	0.11	-0.2
3,034,408	-		MIT1002_02735	0.13	+0.0
3,034,421	-		MIT1002_02735	0.13	+1.2
3,034,432	+		MIT1002_02735	0.13	+2.0
3,034,438	-		MIT1002_02735	0.14	-0.3
3,034,438	-		MIT1002_02735	0.14	+0.9
3,034,452	-		MIT1002_02735	0.14	+0.2
3,034,490	+		MIT1002_02735	0.15	-0.2
3,034,490	+		MIT1002_02735	0.15	-0.5
3,034,498	-		MIT1002_02735	0.15	+0.5
3,034,498	-		MIT1002_02735	0.15	-0.3
3,034,501	+		MIT1002_02735	0.15	-0.7
3,034,558	+		MIT1002_02735	0.16	+0.8
3,034,561	-		MIT1002_02735	0.17	+0.4
3,034,566	-		MIT1002_02735	0.17	+0.4
3,034,566	-		MIT1002_02735	0.17	+0.1
3,034,566	-		MIT1002_02735	0.17	-0.5
3,034,566	-		MIT1002_02735	0.17	+1.6
3,034,577	-		MIT1002_02735	0.17	+2.6
3,034,603	+		MIT1002_02735	0.18	+3.7
3,034,708	+		MIT1002_02735	0.20	-1.1
3,034,744	+		MIT1002_02735	0.21	-0.3
3,034,876	-		MIT1002_02735	0.24	+0.5
3,034,886	+		MIT1002_02735	0.25	+2.5
3,035,082	+		MIT1002_02735	0.29	-0.2
3,035,090	-		MIT1002_02735	0.30	+0.0
3,035,145	-		MIT1002_02735	0.31	-1.2
3,035,169	-		MIT1002_02735	0.31	+0.8
3,035,189	+		MIT1002_02735	0.32	-1.8
3,035,381	-		MIT1002_02735	0.37	-2.1
3,035,641	+		MIT1002_02735	0.43	+0.3
3,035,655	-		MIT1002_02735	0.43	+0.0
3,035,665	+		MIT1002_02735	0.44	+0.2
3,035,673	-		MIT1002_02735	0.44	-0.3
3,035,777	-		MIT1002_02735	0.46	+0.2
3,035,813	-		MIT1002_02735	0.47	+0.5
3,035,822	+		MIT1002_02735	0.48	+0.4
3,035,822	+		MIT1002_02735	0.48	-0.8
3,035,822	+		MIT1002_02735	0.48	-0.7
3,035,840	-		MIT1002_02735	0.48	+0.5
3,035,849	-		MIT1002_02735	0.48	-0.9
3,035,863	-		MIT1002_02735	0.49	+0.1
3,035,946	-		MIT1002_02735	0.51	+1.1
3,035,968	+		MIT1002_02735	0.51	+0.1
3,035,992	+		MIT1002_02735	0.52	+0.6
3,036,040	+		MIT1002_02735	0.53	+0.3
3,036,042	+		MIT1002_02735	0.53	-0.1
3,036,049	+		MIT1002_02735	0.53	-1.5
3,036,049	+		MIT1002_02735	0.53	+1.8
3,036,049	+		MIT1002_02735	0.53	-0.4
3,036,049	+		MIT1002_02735	0.53	+0.8
3,036,057	-		MIT1002_02735	0.53	+0.9
3,036,057	-		MIT1002_02735	0.53	+1.2
3,036,057	-		MIT1002_02735	0.53	-0.6
3,036,057	-		MIT1002_02735	0.53	-0.3
3,036,057	-		MIT1002_02735	0.53	+0.4
3,036,068	+		MIT1002_02735	0.54	+0.5
3,036,113	-		MIT1002_02735	0.55	-0.8
3,036,120	-		MIT1002_02735	0.55	-2.1
3,036,235	-		MIT1002_02735	0.58	-0.0
3,036,269	+		MIT1002_02735	0.59	+0.2
3,036,272	-		MIT1002_02735	0.59	-0.1
3,036,272	-		MIT1002_02735	0.59	-1.1
3,036,274	+		MIT1002_02735	0.59	+0.5
3,036,302	+		MIT1002_02735	0.59	-0.3
3,036,315	-		MIT1002_02735	0.60	-1.3
3,036,345	+		MIT1002_02735	0.60	-0.0
3,036,362	+		MIT1002_02735	0.61	+1.6
3,036,481	+		MIT1002_02735	0.64	+1.5
3,036,482	+		MIT1002_02735	0.64	+1.2
3,036,505	+		MIT1002_02735	0.64	+0.2
3,036,599	-		MIT1002_02735	0.67	+1.0
3,036,674	+		MIT1002_02735	0.68	+0.4
3,036,718	+		MIT1002_02735	0.70	-0.5
3,036,766	+		MIT1002_02735	0.71	-0.5
3,036,873	+		MIT1002_02735	0.73	+0.8
3,036,873	+		MIT1002_02735	0.73	+0.2
3,036,873	+		MIT1002_02735	0.73	-0.0
3,036,881	-		MIT1002_02735	0.74	-0.8
3,036,890	-		MIT1002_02735	0.74	+0.4
3,036,993	-		MIT1002_02735	0.76	+0.4
3,036,997	+		MIT1002_02735	0.76	-0.2
3,037,000	-		MIT1002_02735	0.76	+0.9
3,037,016	-		MIT1002_02735	0.77	-0.6
3,037,076	+		MIT1002_02735	0.78	+0.8
3,037,084	-		MIT1002_02735	0.79	+0.8
3,037,084	-		MIT1002_02735	0.79	-1.5
3,037,084	-		MIT1002_02735	0.79	-1.0
3,037,136	+		MIT1002_02735	0.80	-1.9
3,037,144	-		MIT1002_02735	0.80	+1.4
3,037,162	+		MIT1002_02735	0.80	+1.4
3,037,183	-		MIT1002_02735	0.81	-0.1
3,037,229	-		MIT1002_02735	0.82	+1.3
3,037,289	-		MIT1002_02735	0.84	-1.3
3,037,299	-		MIT1002_02735	0.84	-0.5
3,037,341	+		MIT1002_02735	0.85	-1.2
3,037,341	+		MIT1002_02735	0.85	-0.5
3,037,341	+		MIT1002_02735	0.85	-1.3
3,037,428	-		MIT1002_02735	0.87	-0.1
3,037,504	-		MIT1002_02735	0.89	-1.9
3,037,516	+		MIT1002_02735	0.89	-1.1
3,037,524	-		MIT1002_02735	0.89	-0.3
3,037,549	+		MIT1002_02735	0.90	+0.0
3,037,552	-				-0.3
3,037,609	-				+0.0
3,037,672	+				-1.8
3,037,673	-				-0.0
3,037,673	-				+0.1
3,037,700	+				+1.9
3,037,723	-				+0.9
3,037,803	-				+0.7
3,037,845	-				+0.5
3,037,929	-				+0.5
3,037,929	-				-0.2
3,037,981	+				-0.7
3,038,061	-		MIT1002_02736	0.17	-0.2
3,038,122	+		MIT1002_02736	0.28	+1.4
3,038,187	-		MIT1002_02736	0.39	+0.1
3,038,189	-		MIT1002_02736	0.40	+0.8
3,038,206	+		MIT1002_02736	0.43	+0.4
3,038,244	+		MIT1002_02736	0.49	-1.2
3,038,281	-		MIT1002_02736	0.56	+0.6
3,038,290	-		MIT1002_02736	0.57	-0.6
3,038,310	+		MIT1002_02736	0.61	+0.2
3,038,323	-		MIT1002_02736	0.63	+1.2
3,038,333	-		MIT1002_02736	0.65	-2.5
3,038,517	-				-0.6
3,038,791	-		MIT1002_02737	0.31	+0.7
3,038,840	+		MIT1002_02737	0.37	+0.8
3,038,853	+		MIT1002_02737	0.38	+0.1
3,038,870	+		MIT1002_02737	0.40	+1.9
3,038,870	+		MIT1002_02737	0.40	-0.3
3,038,871	-		MIT1002_02737	0.40	+0.8
3,038,878	-		MIT1002_02737	0.41	-0.7
3,038,885	-		MIT1002_02737	0.42	+1.4
3,038,895	+		MIT1002_02737	0.43	-0.9
3,038,895	+		MIT1002_02737	0.43	-1.9
3,038,915	+		MIT1002_02737	0.45	-0.6
3,038,915	+		MIT1002_02737	0.45	+2.2
3,038,918	-		MIT1002_02737	0.46	-1.9