Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02673

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
2,972,338	-		MIT1002_02672	0.51	-1.8
2,972,343	-		MIT1002_02672	0.51	+0.7
2,972,343	-		MIT1002_02672	0.51	+2.1
2,972,374	-		MIT1002_02672	0.53	-1.3
2,972,435	+		MIT1002_02672	0.56	+2.6
2,972,435	+		MIT1002_02672	0.56	+0.6
2,972,435	+		MIT1002_02672	0.56	+0.7
2,972,474	-		MIT1002_02672	0.59	+0.5
2,972,474	-		MIT1002_02672	0.59	+1.0
2,972,685	+		MIT1002_02672	0.71	+1.0
2,972,726	-		MIT1002_02672	0.73	+0.4
2,972,743	-		MIT1002_02672	0.74	+2.1
2,972,752	+		MIT1002_02672	0.75	-1.4
2,972,793	-		MIT1002_02672	0.77	+0.8
2,972,798	-		MIT1002_02672	0.78	+1.2
2,972,827	+		MIT1002_02672	0.79	-0.6
2,972,827	+		MIT1002_02672	0.79	+0.6
2,972,835	-		MIT1002_02672	0.80	-1.3
2,972,872	+		MIT1002_02672	0.82	+0.9
2,972,946	-		MIT1002_02672	0.86	+0.4
2,972,982	-		MIT1002_02672	0.88	+0.6
2,973,015	-				+0.1
2,973,016	-				+0.6
2,973,065	+				-0.8
2,973,085	-				-0.6
2,973,102	+				-0.2
2,973,105	-				-1.1
2,973,185	-				-0.1
2,973,187	+				+0.8
2,973,187	+				+1.0
2,973,187	+				+0.0
2,973,187	+				-1.5
2,973,187	+				+0.9
2,973,187	+				-0.3
2,973,187	+				-0.0
2,973,187	+				+1.8
2,973,187	+				+1.7
2,973,195	-				+0.2
2,973,195	-				+2.7
2,973,195	-				-0.2
2,973,195	-				+0.1
2,973,195	-				+0.1
2,973,195	-				+3.0
2,973,195	-				-1.9
2,973,195	-				+1.4
2,973,195	-				-0.7
2,973,195	-				-1.3
2,973,195	-				-0.7
2,973,195	-				-1.4
2,973,195	-				-0.9
2,973,197	+				+0.6
2,973,236	-				-1.6
2,973,254	+				-2.1
2,973,260	+				-1.3
2,973,260	+				-2.3
2,973,379	-				-4.4
2,973,384	-				-0.2
2,973,456	+		MIT1002_02673	0.14	-1.1
2,973,456	+		MIT1002_02673	0.14	-1.9
2,973,497	-		MIT1002_02673	0.16	-1.1
2,973,507	+		MIT1002_02673	0.17	-3.4
2,973,507	+		MIT1002_02673	0.17	-1.8
2,973,630	+		MIT1002_02673	0.24	-2.1
2,973,686	+		MIT1002_02673	0.27	-3.1
2,973,752	+		MIT1002_02673	0.31	+1.1
2,973,760	-		MIT1002_02673	0.32	-4.1
2,973,815	+		MIT1002_02673	0.35	+0.4
2,973,844	+		MIT1002_02673	0.37	-0.2
2,973,852	-		MIT1002_02673	0.37	-1.4
2,973,870	+		MIT1002_02673	0.38	-1.9
2,974,027	+		MIT1002_02673	0.47	-3.4
2,974,028	-		MIT1002_02673	0.47	-0.6
2,974,035	-		MIT1002_02673	0.48	+0.5
2,974,107	-		MIT1002_02673	0.52	-2.1
2,974,109	+		MIT1002_02673	0.52	-1.2
2,974,109	-		MIT1002_02673	0.52	-2.5
2,974,119	+		MIT1002_02673	0.53	-0.3
2,974,152	+		MIT1002_02673	0.55	-1.6
2,974,157	+		MIT1002_02673	0.55	-3.7
2,974,160	-		MIT1002_02673	0.55	-0.5
2,974,160	-		MIT1002_02673	0.55	-2.3
2,974,160	-		MIT1002_02673	0.55	-1.2
2,974,199	-		MIT1002_02673	0.57	-1.9
2,974,232	-		MIT1002_02673	0.59	-2.8
2,974,232	-		MIT1002_02673	0.59	-1.5
2,974,237	+		MIT1002_02673	0.60	-2.2
2,974,328	+		MIT1002_02673	0.65	-3.3
2,974,336	-		MIT1002_02673	0.65	-2.7
2,974,336	-		MIT1002_02673	0.65	-2.6
2,974,336	-		MIT1002_02673	0.65	-1.1
2,974,412	-		MIT1002_02673	0.70	-2.5
2,974,438	-		MIT1002_02673	0.71	-0.7
2,974,438	-		MIT1002_02673	0.71	-1.2
2,974,515	-		MIT1002_02673	0.76	-2.9
2,974,743	+		MIT1002_02673	0.89	-1.0
2,974,745	-		MIT1002_02673	0.89	-0.9
2,974,805	+				+0.5
2,974,813	-				-2.5
2,974,813	-				-2.3
2,974,850	+				-0.5
2,974,851	+				-1.6
2,974,868	+				-2.5
2,974,881	-				-3.0
2,974,912	-				-0.6
2,975,018	+				-2.1
2,975,169	+				-0.3
2,975,212	+		MIT1002_02674	0.14	+0.6
2,975,270	+		MIT1002_02674	0.20	-0.0
2,975,278	+		MIT1002_02674	0.21	-2.0
2,975,286	-		MIT1002_02674	0.22	+1.7
2,975,297	-		MIT1002_02674	0.23	+0.8
2,975,337	+		MIT1002_02674	0.28	-1.8
2,975,345	+		MIT1002_02674	0.29	-1.2
2,975,345	+		MIT1002_02674	0.29	-0.1
2,975,353	-		MIT1002_02674	0.29	+0.1
2,975,353	-		MIT1002_02674	0.29	-0.5
2,975,353	-		MIT1002_02674	0.29	-0.8
2,975,355	-		MIT1002_02674	0.30	-1.3
2,975,445	+		MIT1002_02674	0.40	-0.2
2,975,453	-		MIT1002_02674	0.41	-0.4
2,975,497	+		MIT1002_02674	0.45	-0.3
2,975,527	+		MIT1002_02674	0.49	+0.5
2,975,667	+		MIT1002_02674	0.64	-0.2
2,975,685	-		MIT1002_02674	0.66	-2.0
2,975,685	-		MIT1002_02674	0.66	+0.4
2,975,722	+		MIT1002_02674	0.70	+1.5
2,975,761	+		MIT1002_02674	0.75	+0.7
2,975,820	-		MIT1002_02674	0.81	+0.4
2,975,820	-		MIT1002_02674	0.81	-0.7
2,975,904	-				-0.9