Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02495

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
2,782,207	+				+0.7
2,782,207	+				+0.7
2,782,207	+				-0.4
2,782,207	+				+0.7
2,782,207	+				+1.1
2,782,207	+				+0.4
2,782,215	-				-1.0
2,782,215	-				+1.0
2,782,215	-				+0.4
2,782,215	-				-1.3
2,782,215	-				+0.6
2,782,222	+				+0.7
2,782,222	+				+0.2
2,782,232	+				+0.4
2,782,240	+				-1.1
2,782,291	-				-1.5
2,782,321	-				-0.1
2,782,375	+		MIT1002_02494	0.10	-0.2
2,782,453	-		MIT1002_02494	0.20	+1.2
2,782,457	+		MIT1002_02494	0.21	-0.1
2,782,457	+		MIT1002_02494	0.21	-0.9
2,782,457	+		MIT1002_02494	0.21	-0.1
2,782,465	-		MIT1002_02494	0.22	-1.9
2,782,465	-		MIT1002_02494	0.22	-0.7
2,782,465	-		MIT1002_02494	0.22	-0.5
2,782,472	+		MIT1002_02494	0.22	+2.8
2,782,479	+		MIT1002_02494	0.23	+0.9
2,782,480	-		MIT1002_02494	0.23	+0.2
2,782,603	-		MIT1002_02494	0.39	-0.6
2,782,649	+		MIT1002_02494	0.45	+0.7
2,782,649	+		MIT1002_02494	0.45	+0.1
2,782,656	-		MIT1002_02494	0.46	+1.0
2,782,657	-		MIT1002_02494	0.46	+1.7
2,782,657	-		MIT1002_02494	0.46	-0.5
2,782,657	-		MIT1002_02494	0.46	+2.8
2,782,663	-		MIT1002_02494	0.47	-0.6
2,782,796	+		MIT1002_02494	0.63	+0.8
2,782,796	-		MIT1002_02494	0.63	+0.5
2,782,806	+		MIT1002_02494	0.65	+0.2
2,782,811	+		MIT1002_02494	0.65	+1.2
2,782,811	+		MIT1002_02494	0.65	+0.4
2,782,816	+		MIT1002_02494	0.66	+0.2
2,782,826	-		MIT1002_02494	0.67	-0.6
2,782,838	-		MIT1002_02494	0.69	+0.4
2,782,874	-		MIT1002_02494	0.73	+0.5
2,782,886	-		MIT1002_02494	0.75	-1.3
2,782,886	-		MIT1002_02494	0.75	-2.3
2,782,893	+		MIT1002_02494	0.76	-1.1
2,783,379	+		MIT1002_02495	0.14	-1.5
2,783,387	-		MIT1002_02495	0.14	-2.5
2,783,429	+		MIT1002_02495	0.17	-0.8
2,783,434	+		MIT1002_02495	0.17	+0.2
2,783,485	+		MIT1002_02495	0.20	-1.4
2,783,495	-		MIT1002_02495	0.21	+1.2
2,783,497	+		MIT1002_02495	0.21	+0.8
2,783,497	+		MIT1002_02495	0.21	-0.9
2,783,497	+		MIT1002_02495	0.21	-1.4
2,783,497	+		MIT1002_02495	0.21	-2.3
2,783,497	+		MIT1002_02495	0.21	-1.0
2,783,497	+		MIT1002_02495	0.21	-2.5
2,783,497	+		MIT1002_02495	0.21	-2.6
2,783,505	-		MIT1002_02495	0.21	-3.1
2,783,505	-		MIT1002_02495	0.21	-2.5
2,783,530	-		MIT1002_02495	0.23	-0.7
2,783,562	-		MIT1002_02495	0.25	+1.2
2,783,684	-		MIT1002_02495	0.32	+0.7
2,783,717	+		MIT1002_02495	0.34	-0.8
2,783,783	+		MIT1002_02495	0.38	-2.0
2,783,791	-		MIT1002_02495	0.38	+1.5
2,784,014	+		MIT1002_02495	0.52	-3.4
2,784,035	+		MIT1002_02495	0.53	+0.1
2,784,069	-		MIT1002_02495	0.55	+1.2
2,784,115	-		MIT1002_02495	0.58	+0.4
2,784,125	-		MIT1002_02495	0.59	-1.8
2,784,136	-		MIT1002_02495	0.59	-1.0
2,784,168	+		MIT1002_02495	0.61	-0.1
2,784,176	-		MIT1002_02495	0.62	+1.2
2,784,204	+		MIT1002_02495	0.63	-3.3
2,784,212	-		MIT1002_02495	0.64	-2.3
2,784,254	-		MIT1002_02495	0.66	-1.6
2,784,344	-		MIT1002_02495	0.72	-0.5
2,784,344	-		MIT1002_02495	0.72	+0.4
2,784,347	+		MIT1002_02495	0.72	-2.7
2,784,362	+		MIT1002_02495	0.73	-2.0
2,784,370	-		MIT1002_02495	0.73	-2.2
2,784,395	+		MIT1002_02495	0.75	+0.2
2,784,408	-		MIT1002_02495	0.76	-0.1
2,784,417	+		MIT1002_02495	0.76	-1.1
2,784,417	+		MIT1002_02495	0.76	-0.1
2,784,436	-		MIT1002_02495	0.77	-0.3
2,784,456	+		MIT1002_02495	0.78	-0.2
2,784,558	+		MIT1002_02495	0.85	-1.2
2,784,558	+		MIT1002_02495	0.85	-0.5
2,784,558	+		MIT1002_02495	0.85	-3.4
2,784,558	+		MIT1002_02495	0.85	-0.4
2,784,566	-		MIT1002_02495	0.85	-2.0
2,784,566	-		MIT1002_02495	0.85	+0.7
2,784,585	-		MIT1002_02495	0.86	-0.7
2,784,585	-		MIT1002_02495	0.86	-1.1
2,784,595	-		MIT1002_02495	0.87	-3.2
2,784,620	+		MIT1002_02495	0.88	-1.3
2,784,646	+		MIT1002_02495	0.90	+1.1
2,784,688	-				-0.4
2,784,732	-				-1.2
2,784,750	+				+0.9
2,784,758	-				-0.1
2,784,761	+				-1.0
2,784,789	+				+1.4
2,784,796	+				-0.8
2,784,815	+				+0.2
2,784,830	+				+0.7
2,784,848	-				-0.5
2,784,893	-				-0.8
2,785,188	-		MIT1002_02496	0.28	+0.4
2,785,228	+		MIT1002_02496	0.32	+0.2
2,785,228	+		MIT1002_02496	0.32	+1.1
2,785,237	-		MIT1002_02496	0.33	-1.1
2,785,246	-		MIT1002_02496	0.34	+1.3
2,785,383	-		MIT1002_02496	0.47	-1.2
2,785,430	+		MIT1002_02496	0.52	-0.2
2,785,433	-		MIT1002_02496	0.52	+1.2
2,785,475	-		MIT1002_02496	0.56	+0.8
2,785,484	+		MIT1002_02496	0.57	-1.5
2,785,522	+		MIT1002_02496	0.61	+0.1
2,785,629	+		MIT1002_02496	0.71	+0.2
2,785,714	-		MIT1002_02496	0.79	+0.5
2,785,772	+		MIT1002_02496	0.85	+0.2
2,785,772	+		MIT1002_02496	0.85	-1.1
2,785,772	+		MIT1002_02496	0.85	-0.1
2,785,772	+		MIT1002_02496	0.85	+1.4
2,785,780	-		MIT1002_02496	0.86	+0.1
2,785,780	-		MIT1002_02496	0.86	+1.5
2,785,780	-		MIT1002_02496	0.86	-0.7
2,785,780	-		MIT1002_02496	0.86	-1.1
2,785,780	-		MIT1002_02496	0.86	+1.2