Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02458

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
2,747,479	+				+0.9
2,747,482	-				+0.0
2,747,492	-				-0.7
2,747,621	+		MIT1002_02456	0.55	-0.1
2,747,629	-		MIT1002_02456	0.58	+0.2
2,747,638	+		MIT1002_02456	0.62	+2.0
2,747,699	+		MIT1002_02456	0.86	+2.0
2,747,699	+		MIT1002_02456	0.86	+0.0
2,747,699	+		MIT1002_02456	0.86	-0.7
2,747,699	+		MIT1002_02456	0.86	-1.2
2,747,699	+		MIT1002_02456	0.86	-0.5
2,747,699	+		MIT1002_02456	0.86	-1.4
2,747,699	+		MIT1002_02456	0.86	+1.2
2,747,699	+		MIT1002_02456	0.86	-1.0
2,747,699	+		MIT1002_02456	0.86	+0.0
2,747,699	+		MIT1002_02456	0.86	+1.2
2,747,699	+		MIT1002_02456	0.86	+1.6
2,747,699	+		MIT1002_02456	0.86	+0.8
2,747,699	+		MIT1002_02456	0.86	+0.6
2,747,699	+		MIT1002_02456	0.86	-1.6
2,747,699	+		MIT1002_02456	0.86	+0.8
2,747,707	-		MIT1002_02456	0.89	+0.0
2,747,707	-		MIT1002_02456	0.89	-1.2
2,747,707	-		MIT1002_02456	0.89	-0.8
2,747,707	-		MIT1002_02456	0.89	-1.0
2,747,707	-		MIT1002_02456	0.89	-1.1
2,747,707	-		MIT1002_02456	0.89	+0.6
2,747,707	-		MIT1002_02456	0.89	+1.1
2,747,707	-		MIT1002_02456	0.89	+0.3
2,747,707	-		MIT1002_02456	0.89	+0.8
2,747,707	-		MIT1002_02456	0.89	+0.2
2,747,707	-		MIT1002_02456	0.89	+1.2
2,747,707	-		MIT1002_02456	0.89	-2.1
2,747,707	-		MIT1002_02456	0.89	+0.1
2,747,707	-		MIT1002_02456	0.89	-0.8
2,747,707	-		MIT1002_02456	0.89	+0.7
2,747,707	-		MIT1002_02456	0.89	-0.2
2,747,819	-				-1.1
2,747,830	+				-1.3
2,747,838	+				+0.8
2,747,838	+				-0.7
2,747,845	+				-0.5
2,747,847	+				+2.1
2,747,858	-				-0.6
2,747,859	+				+0.5
2,747,920	-				+0.5
2,747,957	-		MIT1002_02457	0.15	+1.1
2,748,041	+		MIT1002_02457	0.36	-0.2
2,748,054	+		MIT1002_02457	0.39	+0.2
2,748,160	-		MIT1002_02457	0.65	-1.4
2,748,175	-		MIT1002_02457	0.69	-0.1
2,748,235	-		MIT1002_02457	0.83	+0.2
2,748,240	-		MIT1002_02457	0.85	+0.6
2,748,240	-		MIT1002_02457	0.85	-3.6
2,748,240	-		MIT1002_02457	0.85	-2.3
2,748,247	-		MIT1002_02457	0.86	+1.5
2,748,266	+				-2.0
2,748,347	-				-0.4
2,748,378	+				-0.5
2,748,386	-				-1.4
2,748,487	-				-0.5
2,748,539	+		MIT1002_02458	0.14	+0.6
2,748,539	+		MIT1002_02458	0.14	-0.3
2,748,539	+		MIT1002_02458	0.14	-1.4
2,748,547	-		MIT1002_02458	0.15	-2.3
2,748,547	-		MIT1002_02458	0.15	-0.5
2,748,547	-		MIT1002_02458	0.15	+1.6
2,748,547	-		MIT1002_02458	0.15	-0.1
2,748,567	+		MIT1002_02458	0.17	-2.2
2,748,669	-		MIT1002_02458	0.28	-1.8
2,748,686	+		MIT1002_02458	0.30	-0.7
2,748,686	+		MIT1002_02458	0.30	-0.7
2,748,686	+		MIT1002_02458	0.30	-1.4
2,748,686	+		MIT1002_02458	0.30	-0.1
2,748,686	+		MIT1002_02458	0.30	-1.2
2,748,694	-		MIT1002_02458	0.31	+0.0
2,748,694	-		MIT1002_02458	0.31	-0.5
2,748,753	-		MIT1002_02458	0.38	+1.6
2,748,817	+		MIT1002_02458	0.45	-0.7
2,748,998	-		MIT1002_02458	0.64	-0.7
2,748,998	-		MIT1002_02458	0.64	-1.6
2,749,016	-		MIT1002_02458	0.66	+0.2
2,749,017	+		MIT1002_02458	0.67	+1.3
2,749,020	-		MIT1002_02458	0.67	-1.7
2,749,025	-		MIT1002_02458	0.67	-1.0
2,749,033	-		MIT1002_02458	0.68	+1.9
2,749,036	+		MIT1002_02458	0.69	-1.4
2,749,036	+		MIT1002_02458	0.69	+1.0
2,749,120	-		MIT1002_02458	0.78	+2.0
2,749,130	-		MIT1002_02458	0.79	-0.3
2,749,157	-		MIT1002_02458	0.82	+0.7
2,749,212	+		MIT1002_02458	0.88	+1.3
2,749,238	+				+0.1
2,749,238	+				-0.2
2,749,260	+				-1.6
2,749,267	-				-1.3
2,749,267	-				+0.1
2,749,313	-				-0.0
2,749,396	-				-0.7
2,749,500	+				+0.3
2,749,500	+				-0.5
2,749,508	-				+0.4
2,749,508	-				-1.3
2,749,516	-		MIT1002_02459	0.10	-1.7
2,749,594	+		MIT1002_02459	0.19	-0.1
2,749,595	-		MIT1002_02459	0.19	-0.2
2,749,603	-		MIT1002_02459	0.20	-1.0
2,749,610	+		MIT1002_02459	0.21	+0.1
2,749,656	+		MIT1002_02459	0.26	+0.8
2,749,820	+		MIT1002_02459	0.45	+0.9
2,749,828	-		MIT1002_02459	0.46	-0.2
2,749,838	-		MIT1002_02459	0.47	-2.1
2,749,838	-		MIT1002_02459	0.47	+1.0
2,749,853	-		MIT1002_02459	0.49	+0.4
2,749,856	+		MIT1002_02459	0.49	-0.0
2,749,856	+		MIT1002_02459	0.49	+0.0
2,749,856	+		MIT1002_02459	0.49	+0.9
2,749,856	+		MIT1002_02459	0.49	+0.9
2,749,864	-		MIT1002_02459	0.50	+0.8
2,749,864	-		MIT1002_02459	0.50	+0.0
2,749,864	-		MIT1002_02459	0.50	-1.4
2,749,864	-		MIT1002_02459	0.50	+2.2
2,749,864	-		MIT1002_02459	0.50	-0.3
2,749,864	-		MIT1002_02459	0.50	-2.2
2,749,872	-		MIT1002_02459	0.51	+0.4
2,749,962	-		MIT1002_02459	0.61	-1.8
2,749,963	-		MIT1002_02459	0.62	-1.8
2,750,025	+		MIT1002_02459	0.69	+0.9
2,750,028	-		MIT1002_02459	0.69	-1.3
2,750,028	-		MIT1002_02459	0.69	+2.8
2,750,086	-		MIT1002_02459	0.76	-0.4
2,750,086	-		MIT1002_02459	0.76	-0.4
2,750,086	-		MIT1002_02459	0.76	-0.4
2,750,105	+		MIT1002_02459	0.78	+0.9
2,750,135	-		MIT1002_02459	0.81	-0.0
2,750,135	-		MIT1002_02459	0.81	+0.5
2,750,135	-		MIT1002_02459	0.81	+0.6
2,750,203	-		MIT1002_02459	0.89	-0.5
2,750,207	+		MIT1002_02459	0.90	-2.0
2,750,208	-		MIT1002_02459	0.90	+0.4
2,750,208	-		MIT1002_02459	0.90	-0.1
2,750,224	+				+1.1
2,750,242	+				-0.2
2,750,298	-				+0.4