Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02390

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
2,665,162	-		MIT1002_02389	0.66	-1.4
2,665,174	-		MIT1002_02389	0.66	-0.7
2,665,226	+		MIT1002_02389	0.68	-1.8
2,665,233	-		MIT1002_02389	0.68	-1.0
2,665,256	+		MIT1002_02389	0.69	-0.4
2,665,277	+		MIT1002_02389	0.70	-1.5
2,665,330	-		MIT1002_02389	0.71	+0.7
2,665,407	+		MIT1002_02389	0.74	+0.6
2,665,455	+		MIT1002_02389	0.76	-0.9
2,665,529	+		MIT1002_02389	0.78	+2.2
2,665,529	+		MIT1002_02389	0.78	+0.1
2,665,529	+		MIT1002_02389	0.78	-3.1
2,665,529	+		MIT1002_02389	0.78	-0.3
2,665,537	-		MIT1002_02389	0.79	-2.8
2,665,537	-		MIT1002_02389	0.79	-1.5
2,665,537	-		MIT1002_02389	0.79	+0.4
2,665,537	-		MIT1002_02389	0.79	+0.4
2,665,537	-		MIT1002_02389	0.79	+0.0
2,665,537	-		MIT1002_02389	0.79	-0.1
2,665,537	-		MIT1002_02389	0.79	-1.0
2,665,537	-		MIT1002_02389	0.79	-2.3
2,665,585	+		MIT1002_02389	0.80	-2.6
2,665,631	-		MIT1002_02389	0.82	-1.5
2,665,661	+		MIT1002_02389	0.83	+0.0
2,665,662	+		MIT1002_02389	0.83	-1.1
2,665,740	-		MIT1002_02389	0.85	-1.8
2,665,835	+		MIT1002_02389	0.89	-1.7
2,665,879	-				-0.9
2,665,894	-				+0.9
2,665,909	-				-0.7
2,665,985	+				-0.2
2,665,993	-				-0.6
2,666,022	-				+1.6
2,666,077	+				-0.4
2,666,186	+				-0.2
2,666,194	-		MIT1002_02390	0.12	+0.2
2,666,242	-		MIT1002_02390	0.29	-2.3
2,666,245	+		MIT1002_02390	0.30	-0.5
2,666,281	-		MIT1002_02390	0.42	-1.4
2,666,330	+		MIT1002_02390	0.59	+0.0
2,666,358	-		MIT1002_02390	0.68	-2.9
2,666,406	+		MIT1002_02390	0.84	-2.7
2,666,428	+				-0.6
2,666,436	-				-0.8
2,666,436	-				-0.7
2,666,487	+		MIT1002_02391	0.11	-1.1
2,666,774	-				-0.9
2,666,779	+				+1.0
2,666,908	-				-0.4
2,666,936	+				+0.4
2,666,999	-				-0.1
2,667,009	+				-1.0
2,667,019	+				-0.7
2,667,019	+				+2.0
2,667,068	+				-0.8
2,667,111	-				-0.3
2,667,164	+				-1.9
2,667,192	-				-1.4
2,667,248	-		MIT1002_02392	0.12	-2.7
2,667,261	-		MIT1002_02392	0.13	-2.0
2,667,310	+		MIT1002_02392	0.16	+0.6
2,667,310	+		MIT1002_02392	0.16	-0.7
2,667,310	+		MIT1002_02392	0.16	-1.2
2,667,310	+		MIT1002_02392	0.16	-0.8
2,667,318	-		MIT1002_02392	0.17	+1.0
2,667,318	-		MIT1002_02392	0.17	-1.9
2,667,362	+		MIT1002_02392	0.19	+0.4
2,667,382	+		MIT1002_02392	0.20	-0.2
2,667,403	+		MIT1002_02392	0.22	+1.9
2,667,443	-		MIT1002_02392	0.24	-1.8