Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01811

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
2,015,136	-		MIT1002_01810	0.68	+0.5
2,015,230	+		MIT1002_01810	0.73	-0.9
2,015,230	+		MIT1002_01810	0.73	+0.1
2,015,238	-		MIT1002_01810	0.74	-1.3
2,015,238	-		MIT1002_01810	0.74	+0.2
2,015,259	+		MIT1002_01810	0.75	-0.9
2,015,374	-		MIT1002_01810	0.81	-0.7
2,015,375	+		MIT1002_01810	0.81	-0.9
2,015,383	-		MIT1002_01810	0.81	-1.8
2,015,385	+		MIT1002_01810	0.81	-0.5
2,015,385	+		MIT1002_01810	0.81	-0.1
2,015,385	+		MIT1002_01810	0.81	-0.6
2,015,385	+		MIT1002_01810	0.81	+0.9
2,015,393	-		MIT1002_01810	0.81	-0.8
2,015,393	-		MIT1002_01810	0.81	-0.1
2,015,393	-		MIT1002_01810	0.81	+0.7
2,015,393	-		MIT1002_01810	0.81	+0.5
2,015,418	+		MIT1002_01810	0.83	+1.5
2,015,692	+				+1.1
2,015,692	+				-0.1
2,015,700	-				+2.6
2,015,700	-				-0.0
2,016,074	-				-1.2
2,016,093	+				-0.9
2,016,173	+				-0.2
2,016,181	-				+0.9
2,016,181	-				-1.4
2,016,181	-				+0.4
2,016,237	-				-1.1
2,016,326	+				-2.3
2,016,328	-				-2.2
2,016,328	-				+0.4
2,016,331	+				+0.3
2,016,403	+		MIT1002_01811	0.12	-1.6
2,016,403	+		MIT1002_01811	0.12	-1.2
2,016,411	-		MIT1002_01811	0.12	+0.3
2,016,411	-		MIT1002_01811	0.12	+0.1
2,016,506	-		MIT1002_01811	0.16	-0.6
2,016,506	-		MIT1002_01811	0.16	-0.6
2,016,544	-		MIT1002_01811	0.17	+0.0
2,016,551	-		MIT1002_01811	0.17	-0.9
2,016,555	-		MIT1002_01811	0.18	+0.6
2,016,606	-		MIT1002_01811	0.19	-0.9
2,016,649	-		MIT1002_01811	0.21	+0.5
2,016,683	+		MIT1002_01811	0.22	+1.2
2,016,683	+		MIT1002_01811	0.22	+0.3
2,016,683	+		MIT1002_01811	0.22	-1.1
2,016,684	-		MIT1002_01811	0.22	+0.2
2,016,691	-		MIT1002_01811	0.23	+0.0
2,016,691	-		MIT1002_01811	0.23	-2.6
2,016,693	+		MIT1002_01811	0.23	-1.2
2,016,693	+		MIT1002_01811	0.23	-1.2
2,016,701	-		MIT1002_01811	0.23	-0.3
2,016,746	-		MIT1002_01811	0.25	+0.0
2,016,776	+		MIT1002_01811	0.26	+0.1
2,016,784	-		MIT1002_01811	0.26	+0.0
2,016,866	+		MIT1002_01811	0.29	-1.7
2,016,947	-		MIT1002_01811	0.32	-2.0
2,016,952	-		MIT1002_01811	0.32	-1.4
2,016,974	-		MIT1002_01811	0.33	+1.2
2,017,008	-		MIT1002_01811	0.34	+0.7
2,017,071	-		MIT1002_01811	0.37	+2.6
2,017,169	-		MIT1002_01811	0.40	-0.1
2,017,170	-		MIT1002_01811	0.40	-0.8
2,017,216	+		MIT1002_01811	0.42	+1.8
2,017,216	+		MIT1002_01811	0.42	+0.4
2,017,216	+		MIT1002_01811	0.42	-1.0
2,017,216	+		MIT1002_01811	0.42	-0.5
2,017,216	+		MIT1002_01811	0.42	+0.2
2,017,219	-		MIT1002_01811	0.42	-0.6
2,017,224	-		MIT1002_01811	0.42	-0.7
2,017,224	-		MIT1002_01811	0.42	+1.3
2,017,298	+		MIT1002_01811	0.45	-0.9
2,017,298	+		MIT1002_01811	0.45	-0.5
2,017,306	-		MIT1002_01811	0.45	+2.5
2,017,337	+		MIT1002_01811	0.46	-0.9
2,017,340	-		MIT1002_01811	0.46	+0.0
2,017,350	-		MIT1002_01811	0.47	-0.3
2,017,350	-		MIT1002_01811	0.47	+2.9
2,017,350	-		MIT1002_01811	0.47	-0.2
2,017,357	+		MIT1002_01811	0.47	+1.1
2,017,380	-		MIT1002_01811	0.48	+0.4
2,017,382	+		MIT1002_01811	0.48	-0.2
2,017,385	-		MIT1002_01811	0.48	-0.3
2,017,415	-		MIT1002_01811	0.49	-1.4
2,017,433	+		MIT1002_01811	0.50	-0.2
2,017,441	-		MIT1002_01811	0.50	+1.2
2,017,484	-		MIT1002_01811	0.52	-0.7
2,017,551	-		MIT1002_01811	0.54	-0.6
2,017,577	+		MIT1002_01811	0.55	-0.1
2,017,579	+		MIT1002_01811	0.55	+0.7
2,017,706	-		MIT1002_01811	0.60	-1.9
2,017,720	-		MIT1002_01811	0.61	+0.3
2,017,783	+		MIT1002_01811	0.63	-1.4
2,017,855	-		MIT1002_01811	0.65	-2.0
2,017,919	+		MIT1002_01811	0.68	-1.4
2,017,919	+		MIT1002_01811	0.68	-2.0
2,017,922	-		MIT1002_01811	0.68	-0.3
2,017,925	-		MIT1002_01811	0.68	+0.1
2,018,018	+		MIT1002_01811	0.71	-1.6
2,018,201	+		MIT1002_01811	0.78	-0.1
2,018,288	-		MIT1002_01811	0.81	+0.5
2,018,288	-		MIT1002_01811	0.81	+0.7
2,018,325	-		MIT1002_01811	0.83	+0.7
2,018,342	-		MIT1002_01811	0.83	-0.5
2,018,342	-		MIT1002_01811	0.83	+0.0
2,018,404	+		MIT1002_01811	0.86	+0.6
2,018,463	+		MIT1002_01811	0.88	-0.7
2,018,471	-		MIT1002_01811	0.88	-2.4
2,018,541	+				-0.6
2,018,564	-				-0.1
2,018,716	+				-0.3
2,018,721	+				+0.2
2,018,729	-				-1.6
2,018,729	-				+0.9
2,018,733	+				+0.2
2,018,734	-				+0.6
2,018,734	-				+1.0
2,018,756	+				-0.1
2,018,762	-				+1.5
2,018,764	-				-0.4
2,018,764	-				+0.6
2,018,781	-				+0.7
2,018,823	+				-1.5
2,018,854	-				-1.5
2,018,899	-				-1.4
2,018,919	-				+0.6
2,018,933	+				+0.4
2,019,049	+				+0.2
2,019,049	+				+1.4
2,019,049	+				-0.9
2,019,057	-				-0.7
2,019,057	-				+1.2
2,019,063	+				-0.1
2,019,152	+				-0.1
2,019,154	+				-1.3
2,019,162	-				+0.6
2,019,162	-				-0.5
2,019,194	-				-0.5
2,019,298	-		MIT1002_01812	0.14	+0.9
2,019,298	-		MIT1002_01812	0.14	+0.7
2,019,352	-		MIT1002_01812	0.17	+1.4
2,019,412	-		MIT1002_01812	0.20	-0.4
2,019,450	+		MIT1002_01812	0.22	-0.5
2,019,455	+		MIT1002_01812	0.22	-0.6
2,019,518	+		MIT1002_01812	0.25	+1.2
2,019,629	+		MIT1002_01812	0.31	+0.5
2,019,654	+		MIT1002_01812	0.32	+0.5
2,019,753	+		MIT1002_01812	0.37	+1.3
2,019,761	-		MIT1002_01812	0.38	+0.1