Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01686

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
1,874,614	-		MIT1002_01685	0.83	-0.3
1,874,828	+		MIT1002_01685	0.88	+0.9
1,874,850	+		MIT1002_01685	0.88	-0.9
1,874,863	+		MIT1002_01685	0.89	+1.4
1,874,871	-		MIT1002_01685	0.89	+0.3
1,874,871	-		MIT1002_01685	0.89	-0.1
1,874,893	+		MIT1002_01685	0.89	+3.2
1,874,894	+		MIT1002_01685	0.90	+0.9
1,874,894	+		MIT1002_01685	0.90	-2.5
1,874,894	+		MIT1002_01685	0.90	-0.5
1,874,895	-		MIT1002_01685	0.90	-0.5
1,874,902	-		MIT1002_01685	0.90	-1.4
1,874,933	+				-2.9
1,874,936	+				-1.0
1,874,960	+				-1.3
1,874,960	+				+0.2
1,874,960	+				-2.4
1,874,966	-				-1.2
1,874,970	+				-1.0
1,875,032	+				+1.2
1,875,032	+				+0.6
1,875,062	-				-0.3
1,875,074	+				-0.8
1,875,074	+				-1.1
1,875,128	-				-0.5
1,875,157	-				-1.1
1,875,186	+				+1.5
1,875,282	+				+0.3
1,875,282	+				+1.2
1,875,289	+				+0.8
1,875,289	+				-0.6
1,875,324	+				-1.8
1,875,326	+				+1.1
1,875,326	+				-0.5
1,875,326	+				+0.8
1,875,334	-				-0.1
1,875,344	+				-2.1
1,875,371	-				-0.0
1,875,478	+				+0.5
1,875,522	-				-0.4
1,875,530	-				+0.3
1,875,540	+				-0.3
1,875,658	+		MIT1002_01686	0.29	+2.2
1,875,674	+		MIT1002_01686	0.34	-0.4
1,875,696	+		MIT1002_01686	0.42	+0.0
1,875,731	+		MIT1002_01686	0.53	-0.1
1,875,732	-		MIT1002_01686	0.53	+0.6
1,875,732	-		MIT1002_01686	0.53	+3.5
1,875,800	-		MIT1002_01686	0.76	+0.6
1,875,804	+		MIT1002_01686	0.77	+0.6
1,875,804	+		MIT1002_01686	0.77	+2.9
1,875,804	+		MIT1002_01686	0.77	-0.4
1,875,812	-		MIT1002_01686	0.80	-0.2
1,875,838	+		MIT1002_01686	0.88	+0.4
1,875,838	+		MIT1002_01686	0.88	+0.8
1,875,879	-				+0.6
1,875,946	-				-0.1
1,875,990	+				-0.2
1,875,990	+				-2.0
1,875,998	-				-0.3
1,876,047	+				-1.0
1,876,096	-				+0.9
1,876,173	+				-0.1
1,876,173	+				-1.2
1,876,181	-				-0.6
1,876,245	+		MIT1002_01687	0.34	-0.9
1,876,270	+		MIT1002_01687	0.44	-2.2
1,876,342	+		MIT1002_01687	0.72	+3.4
1,876,394	+				+1.2
1,876,402	-				+0.8
1,876,409	-				-0.4
1,876,457	-				+0.4
1,876,537	+				+2.2
1,876,537	+				+3.0
1,876,538	-				+0.2
1,876,545	-				-0.6
1,876,686	+		MIT1002_01688	0.14	+0.6
1,876,694	-		MIT1002_01688	0.15	+0.9
1,876,696	+		MIT1002_01688	0.15	-0.6
1,876,699	-		MIT1002_01688	0.15	+0.9
1,876,704	-		MIT1002_01688	0.16	+0.8
1,876,713	-		MIT1002_01688	0.16	-0.5
1,876,731	+		MIT1002_01688	0.18	+2.2
1,876,776	+		MIT1002_01688	0.22	+0.9
1,876,777	+		MIT1002_01688	0.22	-0.7
1,876,777	+		MIT1002_01688	0.22	-0.2
1,876,785	-		MIT1002_01688	0.23	-0.2
1,876,843	-		MIT1002_01688	0.27	+1.4
1,876,863	-		MIT1002_01688	0.29	+0.1
1,876,865	+		MIT1002_01688	0.29	+0.2