Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01560

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
1,713,533	+		MIT1002_01559	0.59	-0.6
1,713,541	-		MIT1002_01559	0.60	-0.4
1,713,552	-		MIT1002_01559	0.60	-1.5
1,713,630	-		MIT1002_01559	0.64	+1.2
1,713,630	-		MIT1002_01559	0.64	+1.8
1,713,686	-		MIT1002_01559	0.67	-0.4
1,713,695	-		MIT1002_01559	0.68	-1.2
1,713,776	+		MIT1002_01559	0.72	+2.2
1,713,823	+		MIT1002_01559	0.74	-1.2
1,713,984	+		MIT1002_01559	0.82	+0.2
1,714,117	-		MIT1002_01559	0.89	+0.3
1,714,148	+				+0.9
1,714,249	+				-0.6
1,714,252	+				-0.2
1,714,252	-				+1.3
1,714,257	-				+1.2
1,714,413	+				+0.6
1,714,513	+				-0.3
1,714,606	+				-1.4
1,714,609	-				-0.4
1,714,611	+				-0.0
1,714,635	-		MIT1002_01560	0.12	+0.3
1,714,675	+		MIT1002_01560	0.15	-0.2
1,714,685	+		MIT1002_01560	0.16	-0.2
1,714,703	-		MIT1002_01560	0.18	+1.1
1,714,812	+		MIT1002_01560	0.29	+1.1
1,714,813	-		MIT1002_01560	0.29	-0.6
1,714,925	-		MIT1002_01560	0.40	+2.2
1,714,955	-		MIT1002_01560	0.43	+1.2
1,714,982	-		MIT1002_01560	0.45	-0.1
1,714,990	+		MIT1002_01560	0.46	+0.2
1,714,990	+		MIT1002_01560	0.46	-0.4
1,714,990	+		MIT1002_01560	0.46	+0.5
1,714,990	+		MIT1002_01560	0.46	+0.9
1,714,990	+		MIT1002_01560	0.46	+0.4
1,714,998	-		MIT1002_01560	0.47	-0.5
1,715,038	+		MIT1002_01560	0.51	-1.3
1,715,040	+		MIT1002_01560	0.51	+0.2
1,715,076	+		MIT1002_01560	0.55	-0.4
1,715,208	+		MIT1002_01560	0.68	+0.7
1,715,230	-		MIT1002_01560	0.70	+1.8
1,715,237	+		MIT1002_01560	0.70	-1.4
1,715,240	-		MIT1002_01560	0.71	+1.1
1,715,242	+		MIT1002_01560	0.71	+0.1
1,715,293	+		MIT1002_01560	0.76	+0.0
1,715,293	+		MIT1002_01560	0.76	-0.5
1,715,293	+		MIT1002_01560	0.76	-1.8
1,715,301	-		MIT1002_01560	0.77	+2.0
1,715,332	-		MIT1002_01560	0.80	-0.6
1,715,353	-		MIT1002_01560	0.82	-0.0
1,715,451	+				+0.3
1,715,503	+				-0.7
1,715,503	+				+0.3
1,715,505	+				+0.8
1,715,511	-				+0.1
1,715,511	-				+0.4
1,715,588	-				-0.1
1,715,593	-				+0.1
1,715,714	+				+1.8
1,715,729	-				-1.4
1,715,784	+				-0.8
1,715,788	-				-0.6
1,715,791	+				-1.5
1,715,792	-				-0.1
1,715,794	+				-0.9
1,715,853	+				+1.6
1,715,853	+				-1.2
1,715,858	+				-0.2
1,715,858	+				+1.6
1,715,858	+				-0.4
1,715,858	+				+1.6
1,715,861	-				+0.6
1,715,866	-				+0.1
1,715,866	-				+1.6
1,715,866	-				-0.2
1,715,889	-				-0.2
1,715,889	-				+1.5
1,715,889	-				+0.3
1,715,979	-				-2.1
1,715,979	-				-0.4
1,716,021	-				+2.2
1,716,054	+				+0.5
1,716,056	-				-0.8
1,716,056	-				-2.2
1,716,062	-				-2.2
1,716,118	+				-0.5
1,716,118	+				-1.2
1,716,118	+				-0.5
1,716,118	+				+0.1
1,716,118	+				-0.9
1,716,126	-				+1.5
1,716,126	-				+0.8
1,716,126	-				-1.0
1,716,126	-				-1.0
1,716,126	-				-0.2
1,716,169	-		MIT1002_01561	0.11	-0.8
1,716,194	+		MIT1002_01561	0.12	-1.1
1,716,324	-		MIT1002_01561	0.16	-1.2
1,716,324	-		MIT1002_01561	0.16	-0.4
1,716,393	+		MIT1002_01561	0.19	+0.3
1,716,440	-		MIT1002_01561	0.20	-0.2
1,716,440	-		MIT1002_01561	0.20	-0.8
1,716,491	-		MIT1002_01561	0.22	+0.2
1,716,513	-		MIT1002_01561	0.22	-0.9