Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01526

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01524 and MIT1002_01525 are separated by 134 nucleotidesMIT1002_01525 and MIT1002_01526 are separated by 65 nucleotidesMIT1002_01526 and MIT1002_01527 are separated by 16 nucleotidesMIT1002_01527 and MIT1002_01528 are separated by 18 nucleotides MIT1002_01524: MIT1002_01524 - Elongation factor G 1, at 1,673,378 to 1,675,465 _01524 MIT1002_01525: MIT1002_01525 - hypothetical protein, at 1,675,600 to 1,675,995 _01525 MIT1002_01526: MIT1002_01526 - putative transposase OrfB, at 1,676,061 to 1,676,828 _01526 MIT1002_01527: MIT1002_01527 - cyanate hydratase, at 1,676,845 to 1,677,009 _01527 MIT1002_01528: MIT1002_01528 - Serine/threonine-protein kinase Pkn1, at 1,677,028 to 1,678,938 _01528 Position (kb) 1676 1677Strain fitness (log2 ratio) -2 -1 0 1at 1675.490 kb on + strandat 1676.158 kb on - strand, within MIT1002_01526at 1676.870 kb on - strand, within MIT1002_01527at 1676.902 kb on - strand, within MIT1002_01527at 1676.902 kb on - strand, within MIT1002_01527at 1676.951 kb on - strand, within MIT1002_01527at 1676.977 kb on - strand, within MIT1002_01527at 1677.018 kb on + strandat 1677.075 kb on + strandat 1677.091 kb on - strandat 1677.303 kb on + strand, within MIT1002_01528at 1677.321 kb on + strand, within MIT1002_01528at 1677.369 kb on - strand, within MIT1002_01528at 1677.387 kb on - strand, within MIT1002_01528at 1677.388 kb on + strand, within MIT1002_01528at 1677.401 kb on - strand, within MIT1002_01528at 1677.406 kb on - strand, within MIT1002_01528at 1677.457 kb on - strand, within MIT1002_01528at 1677.471 kb on + strand, within MIT1002_01528at 1677.479 kb on - strand, within MIT1002_01528at 1677.479 kb on - strand, within MIT1002_01528at 1677.479 kb on - strand, within MIT1002_01528at 1677.484 kb on + strand, within MIT1002_01528at 1677.484 kb on + strand, within MIT1002_01528at 1677.528 kb on - strand, within MIT1002_01528at 1677.553 kb on + strand, within MIT1002_01528at 1677.599 kb on - strand, within MIT1002_01528at 1677.660 kb on - strand, within MIT1002_01528at 1677.675 kb on + strand, within MIT1002_01528at 1677.765 kb on + strand, within MIT1002_01528at 1677.781 kb on - strand, within MIT1002_01528

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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1,675,490 + +0.8
1,676,158 - MIT1002_01526 0.13 -1.7
1,676,870 - MIT1002_01527 0.15 +0.2
1,676,902 - MIT1002_01527 0.35 +0.4
1,676,902 - MIT1002_01527 0.35 -1.2
1,676,951 - MIT1002_01527 0.64 -2.2
1,676,977 - MIT1002_01527 0.80 +0.7
1,677,018 + +0.7
1,677,075 + +1.1
1,677,091 - -1.9
1,677,303 + MIT1002_01528 0.14 +1.3
1,677,321 + MIT1002_01528 0.15 +0.4
1,677,369 - MIT1002_01528 0.18 +1.4
1,677,387 - MIT1002_01528 0.19 -0.6
1,677,388 + MIT1002_01528 0.19 +0.8
1,677,401 - MIT1002_01528 0.20 +0.9
1,677,406 - MIT1002_01528 0.20 -2.7
1,677,457 - MIT1002_01528 0.22 +1.2
1,677,471 + MIT1002_01528 0.23 -0.4
1,677,479 - MIT1002_01528 0.24 +0.4
1,677,479 - MIT1002_01528 0.24 +0.2
1,677,479 - MIT1002_01528 0.24 +0.1
1,677,484 + MIT1002_01528 0.24 -0.1
1,677,484 + MIT1002_01528 0.24 +0.3
1,677,528 - MIT1002_01528 0.26 -0.6
1,677,553 + MIT1002_01528 0.27 -0.2
1,677,599 - MIT1002_01528 0.30 +0.5
1,677,660 - MIT1002_01528 0.33 -0.1
1,677,675 + MIT1002_01528 0.34 -0.7
1,677,765 + MIT1002_01528 0.39 -0.7
1,677,781 - MIT1002_01528 0.39 -1.8

Or see this region's nucleotide sequence