Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01381

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01380 and MIT1002_01381 are separated by 2 nucleotidesMIT1002_01381 and MIT1002_01382 overlap by 4 nucleotidesMIT1002_01382 and MIT1002_01383 overlap by 30 nucleotides MIT1002_01380: MIT1002_01380 - 8-amino-7-oxononanoate synthase, at 1,531,414 to 1,532,775 _01380 MIT1002_01381: MIT1002_01381 - Malonyl-CoA O-methyltransferase BioC, at 1,532,778 to 1,533,878 _01381 MIT1002_01382: MIT1002_01382 - ATP-dependent dethiobiotin synthetase BioD 1, at 1,533,875 to 1,534,645 _01382 MIT1002_01383: MIT1002_01383 - Peptidase E, at 1,534,616 to 1,535,338 _01383 Position (kb) 1532 1533 1534Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 1531.778 kb on + strand, within MIT1002_01380at 1531.864 kb on + strand, within MIT1002_01380at 1531.868 kb on - strand, within MIT1002_01380at 1531.868 kb on - strand, within MIT1002_01380at 1531.874 kb on + strand, within MIT1002_01380at 1531.874 kb on + strand, within MIT1002_01380at 1531.882 kb on - strand, within MIT1002_01380at 1531.882 kb on - strand, within MIT1002_01380at 1532.054 kb on + strand, within MIT1002_01380at 1532.108 kb on + strand, within MIT1002_01380at 1532.108 kb on + strand, within MIT1002_01380at 1532.116 kb on - strand, within MIT1002_01380at 1532.116 kb on - strand, within MIT1002_01380at 1532.116 kb on - strand, within MIT1002_01380at 1532.144 kb on - strand, within MIT1002_01380at 1532.149 kb on + strand, within MIT1002_01380at 1532.164 kb on - strand, within MIT1002_01380at 1532.164 kb on - strand, within MIT1002_01380at 1532.174 kb on + strand, within MIT1002_01380at 1532.203 kb on + strand, within MIT1002_01380at 1532.222 kb on + strand, within MIT1002_01380at 1532.322 kb on + strand, within MIT1002_01380at 1532.325 kb on + strand, within MIT1002_01380at 1532.330 kb on + strand, within MIT1002_01380at 1532.330 kb on + strand, within MIT1002_01380at 1532.330 kb on - strand, within MIT1002_01380at 1532.338 kb on - strand, within MIT1002_01380at 1532.338 kb on - strand, within MIT1002_01380at 1532.338 kb on - strand, within MIT1002_01380at 1532.358 kb on - strand, within MIT1002_01380at 1532.358 kb on - strand, within MIT1002_01380at 1532.426 kb on + strand, within MIT1002_01380at 1532.435 kb on - strand, within MIT1002_01380at 1532.506 kb on - strand, within MIT1002_01380at 1532.543 kb on + strand, within MIT1002_01380at 1532.543 kb on + strand, within MIT1002_01380at 1532.543 kb on + strand, within MIT1002_01380at 1532.543 kb on + strand, within MIT1002_01380at 1532.551 kb on - strand, within MIT1002_01380at 1532.551 kb on - strand, within MIT1002_01380at 1532.583 kb on + strand, within MIT1002_01380at 1532.641 kb on + strandat 1532.677 kb on - strandat 1532.741 kb on + strandat 1532.743 kb on + strandat 1532.743 kb on + strandat 1532.745 kb on - strandat 1532.751 kb on - strandat 1532.943 kb on + strand, within MIT1002_01381at 1532.985 kb on + strand, within MIT1002_01381at 1532.993 kb on - strand, within MIT1002_01381at 1532.993 kb on - strand, within MIT1002_01381at 1533.020 kb on + strand, within MIT1002_01381at 1533.026 kb on + strand, within MIT1002_01381at 1533.037 kb on + strand, within MIT1002_01381at 1533.039 kb on + strand, within MIT1002_01381at 1533.053 kb on - strand, within MIT1002_01381at 1533.083 kb on - strand, within MIT1002_01381at 1533.083 kb on - strand, within MIT1002_01381at 1533.167 kb on + strand, within MIT1002_01381at 1533.170 kb on - strand, within MIT1002_01381at 1533.170 kb on - strand, within MIT1002_01381at 1533.172 kb on + strand, within MIT1002_01381at 1533.231 kb on - strand, within MIT1002_01381at 1533.233 kb on + strand, within MIT1002_01381at 1533.306 kb on + strand, within MIT1002_01381at 1533.315 kb on + strand, within MIT1002_01381at 1533.323 kb on - strand, within MIT1002_01381at 1533.323 kb on - strand, within MIT1002_01381at 1533.323 kb on - strand, within MIT1002_01381at 1533.335 kb on - strand, within MIT1002_01381at 1533.383 kb on + strand, within MIT1002_01381at 1533.383 kb on + strand, within MIT1002_01381at 1533.383 kb on + strand, within MIT1002_01381at 1533.383 kb on + strand, within MIT1002_01381at 1533.383 kb on + strand, within MIT1002_01381at 1533.391 kb on - strand, within MIT1002_01381at 1533.391 kb on - strand, within MIT1002_01381at 1533.463 kb on + strand, within MIT1002_01381at 1533.471 kb on - strand, within MIT1002_01381at 1533.554 kb on + strand, within MIT1002_01381at 1533.562 kb on - strand, within MIT1002_01381at 1533.590 kb on + strand, within MIT1002_01381at 1533.606 kb on - strand, within MIT1002_01381at 1533.639 kb on - strand, within MIT1002_01381at 1533.674 kb on + strand, within MIT1002_01381at 1533.692 kb on + strand, within MIT1002_01381at 1533.697 kb on + strand, within MIT1002_01381at 1533.728 kb on + strand, within MIT1002_01381at 1533.733 kb on + strand, within MIT1002_01381at 1533.735 kb on - strand, within MIT1002_01381at 1533.852 kb on + strandat 1533.891 kb on - strandat 1533.913 kb on + strandat 1533.940 kb on + strandat 1533.948 kb on - strandat 1533.948 kb on - strandat 1533.948 kb on - strandat 1534.009 kb on + strand, within MIT1002_01382at 1534.009 kb on + strand, within MIT1002_01382at 1534.015 kb on - strand, within MIT1002_01382at 1534.017 kb on - strand, within MIT1002_01382at 1534.214 kb on - strand, within MIT1002_01382at 1534.236 kb on + strand, within MIT1002_01382at 1534.257 kb on + strand, within MIT1002_01382at 1534.313 kb on - strand, within MIT1002_01382at 1534.313 kb on - strand, within MIT1002_01382at 1534.318 kb on - strand, within MIT1002_01382at 1534.326 kb on - strand, within MIT1002_01382at 1534.332 kb on + strand, within MIT1002_01382at 1534.345 kb on + strand, within MIT1002_01382at 1534.345 kb on + strand, within MIT1002_01382at 1534.345 kb on + strand, within MIT1002_01382at 1534.353 kb on - strand, within MIT1002_01382at 1534.407 kb on - strand, within MIT1002_01382at 1534.493 kb on + strand, within MIT1002_01382at 1534.543 kb on - strand, within MIT1002_01382at 1534.545 kb on + strand, within MIT1002_01382at 1534.547 kb on + strand, within MIT1002_01382at 1534.744 kb on - strand, within MIT1002_01383at 1534.744 kb on - strand, within MIT1002_01383at 1534.749 kb on - strand, within MIT1002_01383at 1534.749 kb on - strand, within MIT1002_01383at 1534.749 kb on - strand, within MIT1002_01383at 1534.749 kb on - strand, within MIT1002_01383at 1534.749 kb on - strand, within MIT1002_01383at 1534.773 kb on - strand, within MIT1002_01383at 1534.779 kb on + strand, within MIT1002_01383

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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1,531,778 + MIT1002_01380 0.27 -0.3
1,531,864 + MIT1002_01380 0.33 +0.5
1,531,868 - MIT1002_01380 0.33 -0.7
1,531,868 - MIT1002_01380 0.33 -1.6
1,531,874 + MIT1002_01380 0.34 +0.3
1,531,874 + MIT1002_01380 0.34 -0.6
1,531,882 - MIT1002_01380 0.34 +0.5
1,531,882 - MIT1002_01380 0.34 -1.5
1,532,054 + MIT1002_01380 0.47 -0.9
1,532,108 + MIT1002_01380 0.51 -2.6
1,532,108 + MIT1002_01380 0.51 -2.0
1,532,116 - MIT1002_01380 0.52 -3.1
1,532,116 - MIT1002_01380 0.52 -1.6
1,532,116 - MIT1002_01380 0.52 -3.9
1,532,144 - MIT1002_01380 0.54 -1.9
1,532,149 + MIT1002_01380 0.54 -0.4
1,532,164 - MIT1002_01380 0.55 -2.0
1,532,164 - MIT1002_01380 0.55 -2.4
1,532,174 + MIT1002_01380 0.56 -1.2
1,532,203 + MIT1002_01380 0.58 +1.0
1,532,222 + MIT1002_01380 0.59 +0.1
1,532,322 + MIT1002_01380 0.67 -1.3
1,532,325 + MIT1002_01380 0.67 -3.2
1,532,330 + MIT1002_01380 0.67 +0.5
1,532,330 + MIT1002_01380 0.67 -2.1
1,532,330 - MIT1002_01380 0.67 -0.7
1,532,338 - MIT1002_01380 0.68 -1.3
1,532,338 - MIT1002_01380 0.68 -0.8
1,532,338 - MIT1002_01380 0.68 -1.4
1,532,358 - MIT1002_01380 0.69 -1.9
1,532,358 - MIT1002_01380 0.69 -2.0
1,532,426 + MIT1002_01380 0.74 -3.1
1,532,435 - MIT1002_01380 0.75 -1.2
1,532,506 - MIT1002_01380 0.80 -1.9
1,532,543 + MIT1002_01380 0.83 -6.0
1,532,543 + MIT1002_01380 0.83 +0.3
1,532,543 + MIT1002_01380 0.83 -1.8
1,532,543 + MIT1002_01380 0.83 -1.7
1,532,551 - MIT1002_01380 0.83 -1.7
1,532,551 - MIT1002_01380 0.83 -1.8
1,532,583 + MIT1002_01380 0.86 -2.3
1,532,641 + -1.6
1,532,677 - -3.5
1,532,741 + +0.5
1,532,743 + -0.6
1,532,743 + -1.2
1,532,745 - -3.2
1,532,751 - -4.4
1,532,943 + MIT1002_01381 0.15 -1.6
1,532,985 + MIT1002_01381 0.19 -1.6
1,532,993 - MIT1002_01381 0.20 -2.7
1,532,993 - MIT1002_01381 0.20 -3.1
1,533,020 + MIT1002_01381 0.22 +1.6
1,533,026 + MIT1002_01381 0.23 -0.2
1,533,037 + MIT1002_01381 0.24 -2.0
1,533,039 + MIT1002_01381 0.24 -1.2
1,533,053 - MIT1002_01381 0.25 -2.6
1,533,083 - MIT1002_01381 0.28 -2.2
1,533,083 - MIT1002_01381 0.28 -1.5
1,533,167 + MIT1002_01381 0.35 -3.5
1,533,170 - MIT1002_01381 0.36 -2.5
1,533,170 - MIT1002_01381 0.36 -2.5
1,533,172 + MIT1002_01381 0.36 -1.2
1,533,231 - MIT1002_01381 0.41 -0.0
1,533,233 + MIT1002_01381 0.41 -1.5
1,533,306 + MIT1002_01381 0.48 -3.7
1,533,315 + MIT1002_01381 0.49 +1.0
1,533,323 - MIT1002_01381 0.50 -1.0
1,533,323 - MIT1002_01381 0.50 -2.6
1,533,323 - MIT1002_01381 0.50 +1.3
1,533,335 - MIT1002_01381 0.51 -0.9
1,533,383 + MIT1002_01381 0.55 -1.2
1,533,383 + MIT1002_01381 0.55 -1.2
1,533,383 + MIT1002_01381 0.55 -2.5
1,533,383 + MIT1002_01381 0.55 -1.7
1,533,383 + MIT1002_01381 0.55 -0.9
1,533,391 - MIT1002_01381 0.56 -1.7
1,533,391 - MIT1002_01381 0.56 +0.3
1,533,463 + MIT1002_01381 0.62 -3.4
1,533,471 - MIT1002_01381 0.63 -4.0
1,533,554 + MIT1002_01381 0.70 -0.9
1,533,562 - MIT1002_01381 0.71 -2.3
1,533,590 + MIT1002_01381 0.74 -2.2
1,533,606 - MIT1002_01381 0.75 -1.6
1,533,639 - MIT1002_01381 0.78 -3.8
1,533,674 + MIT1002_01381 0.81 -3.8
1,533,692 + MIT1002_01381 0.83 -2.7
1,533,697 + MIT1002_01381 0.83 -0.9
1,533,728 + MIT1002_01381 0.86 -1.3
1,533,733 + MIT1002_01381 0.87 +0.3
1,533,735 - MIT1002_01381 0.87 -3.2
1,533,852 + -1.4
1,533,891 - -5.7
1,533,913 + -0.8
1,533,940 + -2.5
1,533,948 - -2.0
1,533,948 - -3.4
1,533,948 - -2.4
1,534,009 + MIT1002_01382 0.17 -3.2
1,534,009 + MIT1002_01382 0.17 -2.2
1,534,015 - MIT1002_01382 0.18 -0.9
1,534,017 - MIT1002_01382 0.18 -3.3
1,534,214 - MIT1002_01382 0.44 -3.3
1,534,236 + MIT1002_01382 0.47 -1.3
1,534,257 + MIT1002_01382 0.50 -0.0
1,534,313 - MIT1002_01382 0.57 -7.3
1,534,313 - MIT1002_01382 0.57 -3.8
1,534,318 - MIT1002_01382 0.57 -2.4
1,534,326 - MIT1002_01382 0.58 -2.6
1,534,332 + MIT1002_01382 0.59 -0.6
1,534,345 + MIT1002_01382 0.61 -2.5
1,534,345 + MIT1002_01382 0.61 +0.7
1,534,345 + MIT1002_01382 0.61 -5.2
1,534,353 - MIT1002_01382 0.62 -0.0
1,534,407 - MIT1002_01382 0.69 -0.5
1,534,493 + MIT1002_01382 0.80 -2.2
1,534,543 - MIT1002_01382 0.87 -2.5
1,534,545 + MIT1002_01382 0.87 -2.4
1,534,547 + MIT1002_01382 0.87 -2.6
1,534,744 - MIT1002_01383 0.18 +0.2
1,534,744 - MIT1002_01383 0.18 +2.0
1,534,749 - MIT1002_01383 0.18 +1.8
1,534,749 - MIT1002_01383 0.18 +0.8
1,534,749 - MIT1002_01383 0.18 -0.4
1,534,749 - MIT1002_01383 0.18 -0.9
1,534,749 - MIT1002_01383 0.18 +0.3
1,534,773 - MIT1002_01383 0.22 +1.8
1,534,779 + MIT1002_01383 0.23 +0.5

Or see this region's nucleotide sequence