Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01380

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
1,530,525	-		MIT1002_01379	0.21	-2.3
1,530,660	-		MIT1002_01379	0.33	-0.0
1,530,695	+		MIT1002_01379	0.36	-0.5
1,530,695	-		MIT1002_01379	0.36	-2.5
1,530,710	+		MIT1002_01379	0.37	-1.6
1,530,710	-		MIT1002_01379	0.37	-2.4
1,530,727	-		MIT1002_01379	0.39	+0.1
1,530,782	+		MIT1002_01379	0.44	-2.8
1,530,782	+		MIT1002_01379	0.44	-1.5
1,530,830	+		MIT1002_01379	0.48	-2.6
1,530,833	-		MIT1002_01379	0.48	-2.7
1,530,838	-		MIT1002_01379	0.49	-2.9
1,530,880	-		MIT1002_01379	0.52	-2.9
1,530,909	+		MIT1002_01379	0.55	-1.3
1,530,932	+		MIT1002_01379	0.57	-1.0
1,530,932	+		MIT1002_01379	0.57	-2.5
1,530,957	+		MIT1002_01379	0.59	-0.7
1,530,957	+		MIT1002_01379	0.59	-0.5
1,530,967	+		MIT1002_01379	0.60	-0.0
1,530,967	+		MIT1002_01379	0.60	-6.0
1,530,967	+		MIT1002_01379	0.60	-1.6
1,530,967	+		MIT1002_01379	0.60	-1.7
1,530,967	+		MIT1002_01379	0.60	-6.0
1,530,967	+		MIT1002_01379	0.60	-2.4
1,530,975	-		MIT1002_01379	0.61	-6.8
1,530,975	-		MIT1002_01379	0.61	-0.3
1,530,975	-		MIT1002_01379	0.61	-2.6
1,530,975	-		MIT1002_01379	0.61	-1.7
1,530,975	-		MIT1002_01379	0.61	-1.9
1,531,031	-		MIT1002_01379	0.66	-2.2
1,531,031	-		MIT1002_01379	0.66	-0.9
1,531,097	-		MIT1002_01379	0.72	-1.9
1,531,102	-		MIT1002_01379	0.72	+0.3
1,531,121	+		MIT1002_01379	0.74	-1.5
1,531,198	-		MIT1002_01379	0.81	-1.6
1,531,270	+		MIT1002_01379	0.87	+0.8
1,531,271	-		MIT1002_01379	0.87	-1.1
1,531,372	+				-0.5
1,531,372	+				-0.4
1,531,372	+				-0.0
1,531,380	-				-3.3
1,531,380	-				-2.8
1,531,380	-				-3.0
1,531,380	-				-2.0
1,531,380	-				-2.6
1,531,380	-				-2.6
1,531,380	-				-0.2
1,531,380	-				-3.3
1,531,386	+				+3.6
1,531,404	-				-0.5
1,531,417	+				-1.3
1,531,456	+				-3.5
1,531,554	+		MIT1002_01380	0.10	-2.4
1,531,572	+		MIT1002_01380	0.12	-2.8
1,531,628	+		MIT1002_01380	0.16	-0.2
1,531,631	+		MIT1002_01380	0.16	-3.7
1,531,631	-		MIT1002_01380	0.16	-4.1
1,531,670	-		MIT1002_01380	0.19	-1.6
1,531,730	-		MIT1002_01380	0.23	-3.4
1,531,778	+		MIT1002_01380	0.27	-0.3
1,531,864	+		MIT1002_01380	0.33	+0.5
1,531,868	-		MIT1002_01380	0.33	-0.7
1,531,868	-		MIT1002_01380	0.33	-1.6
1,531,874	+		MIT1002_01380	0.34	+0.3
1,531,874	+		MIT1002_01380	0.34	-0.6
1,531,882	-		MIT1002_01380	0.34	+0.5
1,531,882	-		MIT1002_01380	0.34	-1.5
1,532,054	+		MIT1002_01380	0.47	-0.9
1,532,108	+		MIT1002_01380	0.51	-2.6
1,532,108	+		MIT1002_01380	0.51	-2.0
1,532,116	-		MIT1002_01380	0.52	-3.1
1,532,116	-		MIT1002_01380	0.52	-1.6
1,532,116	-		MIT1002_01380	0.52	-3.9
1,532,144	-		MIT1002_01380	0.54	-1.9
1,532,149	+		MIT1002_01380	0.54	-0.4
1,532,164	-		MIT1002_01380	0.55	-2.0
1,532,164	-		MIT1002_01380	0.55	-2.4
1,532,174	+		MIT1002_01380	0.56	-1.2
1,532,203	+		MIT1002_01380	0.58	+1.0
1,532,222	+		MIT1002_01380	0.59	+0.1
1,532,322	+		MIT1002_01380	0.67	-1.3
1,532,325	+		MIT1002_01380	0.67	-3.2
1,532,330	+		MIT1002_01380	0.67	+0.5
1,532,330	+		MIT1002_01380	0.67	-2.1
1,532,330	-		MIT1002_01380	0.67	-0.7
1,532,338	-		MIT1002_01380	0.68	-1.3
1,532,338	-		MIT1002_01380	0.68	-0.8
1,532,338	-		MIT1002_01380	0.68	-1.4
1,532,358	-		MIT1002_01380	0.69	-1.9
1,532,358	-		MIT1002_01380	0.69	-2.0
1,532,426	+		MIT1002_01380	0.74	-3.1
1,532,435	-		MIT1002_01380	0.75	-1.2
1,532,506	-		MIT1002_01380	0.80	-1.9
1,532,543	+		MIT1002_01380	0.83	-6.0
1,532,543	+		MIT1002_01380	0.83	+0.3
1,532,543	+		MIT1002_01380	0.83	-1.8
1,532,543	+		MIT1002_01380	0.83	-1.7
1,532,551	-		MIT1002_01380	0.83	-1.7
1,532,551	-		MIT1002_01380	0.83	-1.8
1,532,583	+		MIT1002_01380	0.86	-2.3
1,532,641	+				-1.6
1,532,677	-				-3.5
1,532,741	+				+0.5
1,532,743	+				-0.6
1,532,743	+				-1.2
1,532,745	-				-3.2
1,532,751	-				-4.4
1,532,943	+		MIT1002_01381	0.15	-1.6
1,532,985	+		MIT1002_01381	0.19	-1.6
1,532,993	-		MIT1002_01381	0.20	-2.7
1,532,993	-		MIT1002_01381	0.20	-3.1
1,533,020	+		MIT1002_01381	0.22	+1.6
1,533,026	+		MIT1002_01381	0.23	-0.2
1,533,037	+		MIT1002_01381	0.24	-2.0
1,533,039	+		MIT1002_01381	0.24	-1.2
1,533,053	-		MIT1002_01381	0.25	-2.6
1,533,083	-		MIT1002_01381	0.28	-2.2
1,533,083	-		MIT1002_01381	0.28	-1.5
1,533,167	+		MIT1002_01381	0.35	-3.5
1,533,170	-		MIT1002_01381	0.36	-2.5
1,533,170	-		MIT1002_01381	0.36	-2.5
1,533,172	+		MIT1002_01381	0.36	-1.2
1,533,231	-		MIT1002_01381	0.41	-0.0
1,533,233	+		MIT1002_01381	0.41	-1.5
1,533,306	+		MIT1002_01381	0.48	-3.7
1,533,315	+		MIT1002_01381	0.49	+1.0
1,533,323	-		MIT1002_01381	0.50	-1.0
1,533,323	-		MIT1002_01381	0.50	-2.6
1,533,323	-		MIT1002_01381	0.50	+1.3
1,533,335	-		MIT1002_01381	0.51	-0.9
1,533,383	+		MIT1002_01381	0.55	-1.2
1,533,383	+		MIT1002_01381	0.55	-1.2
1,533,383	+		MIT1002_01381	0.55	-2.5
1,533,383	+		MIT1002_01381	0.55	-1.7
1,533,383	+		MIT1002_01381	0.55	-0.9
1,533,391	-		MIT1002_01381	0.56	-1.7
1,533,391	-		MIT1002_01381	0.56	+0.3
1,533,463	+		MIT1002_01381	0.62	-3.4
1,533,471	-		MIT1002_01381	0.63	-4.0
1,533,554	+		MIT1002_01381	0.70	-0.9
1,533,562	-		MIT1002_01381	0.71	-2.3
1,533,590	+		MIT1002_01381	0.74	-2.2
1,533,606	-		MIT1002_01381	0.75	-1.6
1,533,639	-		MIT1002_01381	0.78	-3.8
1,533,674	+		MIT1002_01381	0.81	-3.8
1,533,692	+		MIT1002_01381	0.83	-2.7
1,533,697	+		MIT1002_01381	0.83	-0.9
1,533,728	+		MIT1002_01381	0.86	-1.3
1,533,733	+		MIT1002_01381	0.87	+0.3
1,533,735	-		MIT1002_01381	0.87	-3.2