Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01292

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
1,431,642	-		MIT1002_01291	0.75	-0.6
1,431,646	+		MIT1002_01291	0.75	+0.7
1,431,711	+		MIT1002_01291	0.78	-2.2
1,431,746	+		MIT1002_01291	0.79	-0.9
1,431,752	-		MIT1002_01291	0.79	+1.2
1,431,842	+		MIT1002_01291	0.83	+0.3
1,432,036	+		MIT1002_01291	0.90	-2.6
1,432,051	+				+1.3
1,432,112	+				-1.5
1,432,162	+				-0.4
1,432,163	+				+0.5
1,432,171	-				+0.9
1,432,171	-				-1.5
1,432,171	-				-1.1
1,432,354	+				-0.7
1,432,363	+				+0.4
1,432,415	+				-1.5
1,432,430	-				+1.0
1,432,430	-				+0.3
1,432,471	+				-2.5
1,432,479	-				-2.2
1,432,479	-				-3.1
1,432,507	-				-0.4
1,432,592	+		MIT1002_01292	0.21	-1.6
1,432,592	+		MIT1002_01292	0.21	-2.1
1,432,617	-		MIT1002_01292	0.26	+1.3
1,432,617	-		MIT1002_01292	0.26	+1.3
1,432,673	+		MIT1002_01292	0.36	-1.2
1,432,682	+		MIT1002_01292	0.38	-1.0
1,432,712	-		MIT1002_01292	0.44	-0.7
1,432,784	-		MIT1002_01292	0.57	-0.4
1,432,784	-		MIT1002_01292	0.57	-2.4
1,432,808	+		MIT1002_01292	0.62	-0.8
1,432,884	-		MIT1002_01292	0.76	-0.7
1,432,890	+		MIT1002_01292	0.77	-2.7
1,432,908	-		MIT1002_01292	0.81	-1.6
1,432,969	+				-1.3
1,432,995	+				-1.7
1,433,003	-				-1.5
1,433,089	+				+0.0
1,433,164	-		MIT1002_01293	0.17	+0.7
1,433,164	-		MIT1002_01293	0.17	+1.5
1,433,280	-		MIT1002_01293	0.77	-1.6
1,433,290	-		MIT1002_01293	0.82	-0.6
1,433,290	-		MIT1002_01293	0.82	-0.5
1,433,610	+		MIT1002_01294	0.19	+0.8
1,433,610	+		MIT1002_01294	0.19	+0.3
1,433,610	+		MIT1002_01294	0.19	-1.3
1,433,618	-		MIT1002_01294	0.20	-0.4
1,433,650	+		MIT1002_01294	0.22	+0.9
1,433,655	+		MIT1002_01294	0.23	-0.9
1,433,657	-		MIT1002_01294	0.23	-1.2
1,433,700	+		MIT1002_01294	0.26	-1.0
1,433,751	-		MIT1002_01294	0.30	-0.1
1,433,805	+		MIT1002_01294	0.34	-0.1
1,433,811	-		MIT1002_01294	0.35	+0.0
1,433,824	+		MIT1002_01294	0.36	-0.5
1,433,832	-		MIT1002_01294	0.36	-1.1
1,433,906	-		MIT1002_01294	0.42	+0.8
1,433,936	+		MIT1002_01294	0.44	+1.0
1,433,953	-		MIT1002_01294	0.46	-0.7
1,433,955	+		MIT1002_01294	0.46	-1.2
1,433,962	+		MIT1002_01294	0.46	-0.9
1,433,970	-		MIT1002_01294	0.47	-1.8
1,434,002	-		MIT1002_01294	0.49	-1.9