Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00943

Experiment: monoculture; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 5
1,044,689	+				-1.9
1,044,697	-				+0.0
1,044,776	-				+0.7
1,044,776	-				-2.2
1,044,810	-				-0.8
1,044,828	+				-2.5
1,044,869	-		MIT1002_00943	0.12	-1.3
1,045,031	+		MIT1002_00943	0.30	-3.4
1,045,042	+		MIT1002_00943	0.31	-0.2
1,045,050	-		MIT1002_00943	0.32	-2.2
1,045,073	-		MIT1002_00943	0.35	-1.0
1,045,073	-		MIT1002_00943	0.35	-2.6
1,045,073	-		MIT1002_00943	0.35	-2.4
1,045,098	+		MIT1002_00943	0.38	-3.0
1,045,106	-		MIT1002_00943	0.38	-1.3
1,045,121	+		MIT1002_00943	0.40	-2.0
1,045,121	+		MIT1002_00943	0.40	-0.3
1,045,129	-		MIT1002_00943	0.41	-2.1
1,045,141	-		MIT1002_00943	0.42	-3.4
1,045,141	-		MIT1002_00943	0.42	-2.6
1,045,149	-		MIT1002_00943	0.43	-0.7
1,045,232	-		MIT1002_00943	0.52	-3.4
1,045,257	-		MIT1002_00943	0.55	-0.7
1,045,289	-		MIT1002_00943	0.59	-2.7
1,045,327	+		MIT1002_00943	0.63	-0.6
1,045,335	-		MIT1002_00943	0.64	-0.8
1,045,335	-		MIT1002_00943	0.64	-1.4
1,045,376	-		MIT1002_00943	0.68	-2.3
1,045,376	-		MIT1002_00943	0.68	-2.8
1,045,407	+		MIT1002_00943	0.71	-0.2
1,045,407	+		MIT1002_00943	0.71	-0.7
1,045,415	-		MIT1002_00943	0.72	-3.8
1,045,478	+		MIT1002_00943	0.79	+0.5
1,045,478	+		MIT1002_00943	0.79	-3.0
1,045,478	+		MIT1002_00943	0.79	-0.8
1,045,478	+		MIT1002_00943	0.79	+0.1
1,045,478	+		MIT1002_00943	0.79	-1.2
1,045,484	+		MIT1002_00943	0.80	-2.8
1,045,486	-		MIT1002_00943	0.80	-1.3
1,045,486	-		MIT1002_00943	0.80	+0.1
1,045,486	-		MIT1002_00943	0.80	-1.9
1,045,491	-		MIT1002_00943	0.81	-0.9
1,045,589	-				-1.4
1,045,619	+				-1.4
1,045,653	+				+0.9
1,045,768	+				-2.5
1,045,776	+				-0.5
1,045,781	-				-1.1
1,045,784	-				-1.1
1,045,784	-				-1.9
1,045,784	-				+0.1
1,045,784	-				-0.8
1,045,784	-				-2.6
1,045,784	-				-2.0
1,045,890	+		MIT1002_00944	0.18	-1.1
1,045,890	+		MIT1002_00944	0.18	-2.1
1,045,929	-		MIT1002_00944	0.21	-1.5
1,045,968	-		MIT1002_00944	0.24	-1.2
1,045,968	-		MIT1002_00944	0.24	-4.3
1,045,970	+		MIT1002_00944	0.24	+0.3
1,045,970	+		MIT1002_00944	0.24	+0.1
1,045,988	+		MIT1002_00944	0.26	-0.5
1,045,996	-		MIT1002_00944	0.26	-1.7
1,045,996	-		MIT1002_00944	0.26	-0.8
1,046,042	-		MIT1002_00944	0.30	-0.3
1,046,077	+		MIT1002_00944	0.33	-0.5
1,046,139	+		MIT1002_00944	0.37	-2.1
1,046,173	-		MIT1002_00944	0.40	-1.0
1,046,173	-		MIT1002_00944	0.40	-3.6
1,046,175	+		MIT1002_00944	0.40	-2.3
1,046,246	-		MIT1002_00944	0.46	-0.1
1,046,257	+		MIT1002_00944	0.47	+0.9
1,046,258	-		MIT1002_00944	0.47	+1.5
1,046,263	+		MIT1002_00944	0.47	-0.4
1,046,270	-		MIT1002_00944	0.48	-1.2
1,046,460	-		MIT1002_00944	0.62	-0.2
1,046,499	-		MIT1002_00944	0.65	-2.2
1,046,502	-		MIT1002_00944	0.66	+0.2
1,046,507	+		MIT1002_00944	0.66	-1.4
1,046,518	+		MIT1002_00944	0.67	+0.6
1,046,526	-		MIT1002_00944	0.68	-1.5
1,046,637	+		MIT1002_00944	0.76	+0.4
1,046,645	-		MIT1002_00944	0.77	-2.5