Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00872

Experiment: monoculture; Experiment C, time point 5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00871 and MIT1002_00872 are separated by 16 nucleotidesMIT1002_00872 and MIT1002_00873 are separated by 187 nucleotidesMIT1002_00873 and MIT1002_00874 are separated by 209 nucleotides MIT1002_00871: MIT1002_00871 - Exopolyphosphatase, at 960,439 to 962,001 _00871 MIT1002_00872: MIT1002_00872 - Polyphosphate kinase, at 962,018 to 964,090 _00872 MIT1002_00873: MIT1002_00873 - formyltetrahydrofolate deformylase, at 964,278 to 964,784 _00873 MIT1002_00874: MIT1002_00874 - Phosphate transport system permease protein PstC, at 964,994 to 967,171 _00874 Position (kb) 962 963 964 965Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 961.087 kb on - strand, within MIT1002_00871at 961.119 kb on - strand, within MIT1002_00871at 961.191 kb on + strand, within MIT1002_00871at 961.284 kb on + strand, within MIT1002_00871at 961.294 kb on + strand, within MIT1002_00871at 961.328 kb on + strand, within MIT1002_00871at 961.360 kb on - strand, within MIT1002_00871at 961.409 kb on - strand, within MIT1002_00871at 961.470 kb on + strand, within MIT1002_00871at 961.478 kb on - strand, within MIT1002_00871at 961.510 kb on + strand, within MIT1002_00871at 961.557 kb on - strand, within MIT1002_00871at 961.566 kb on + strand, within MIT1002_00871at 961.782 kb on + strand, within MIT1002_00871at 961.870 kb on - strandat 961.941 kb on - strandat 962.027 kb on + strandat 962.108 kb on + strandat 962.108 kb on + strandat 962.182 kb on + strandat 962.190 kb on - strandat 962.190 kb on - strandat 962.191 kb on - strandat 962.213 kb on - strandat 962.261 kb on + strand, within MIT1002_00872at 962.267 kb on - strand, within MIT1002_00872at 962.374 kb on + strand, within MIT1002_00872at 962.400 kb on + strand, within MIT1002_00872at 962.435 kb on + strand, within MIT1002_00872at 962.506 kb on + strand, within MIT1002_00872at 962.619 kb on - strand, within MIT1002_00872at 962.679 kb on + strand, within MIT1002_00872at 962.679 kb on + strand, within MIT1002_00872at 962.706 kb on + strand, within MIT1002_00872at 962.744 kb on + strand, within MIT1002_00872at 962.744 kb on + strand, within MIT1002_00872at 962.752 kb on - strand, within MIT1002_00872at 962.813 kb on + strand, within MIT1002_00872at 962.821 kb on - strand, within MIT1002_00872at 962.829 kb on + strand, within MIT1002_00872at 962.837 kb on - strand, within MIT1002_00872at 962.909 kb on + strand, within MIT1002_00872at 962.917 kb on - strand, within MIT1002_00872at 962.917 kb on - strand, within MIT1002_00872at 963.041 kb on + strand, within MIT1002_00872at 963.043 kb on + strand, within MIT1002_00872at 963.048 kb on + strand, within MIT1002_00872at 963.053 kb on + strand, within MIT1002_00872at 963.053 kb on + strand, within MIT1002_00872at 963.056 kb on + strand, within MIT1002_00872at 963.056 kb on - strand, within MIT1002_00872at 963.056 kb on - strand, within MIT1002_00872at 963.056 kb on - strand, within MIT1002_00872at 963.056 kb on - strand, within MIT1002_00872at 963.060 kb on + strand, within MIT1002_00872at 963.061 kb on - strand, within MIT1002_00872at 963.068 kb on - strand, within MIT1002_00872at 963.103 kb on - strand, within MIT1002_00872at 963.116 kb on + strand, within MIT1002_00872at 963.197 kb on + strand, within MIT1002_00872at 963.202 kb on + strand, within MIT1002_00872at 963.202 kb on + strand, within MIT1002_00872at 963.208 kb on - strand, within MIT1002_00872at 963.219 kb on + strand, within MIT1002_00872at 963.227 kb on - strand, within MIT1002_00872at 963.261 kb on - strand, within MIT1002_00872at 963.322 kb on + strand, within MIT1002_00872at 963.330 kb on + strand, within MIT1002_00872at 963.330 kb on - strand, within MIT1002_00872at 963.560 kb on - strand, within MIT1002_00872at 963.649 kb on - strand, within MIT1002_00872at 963.831 kb on + strand, within MIT1002_00872at 963.873 kb on - strand, within MIT1002_00872at 963.922 kb on + strandat 964.070 kb on + strandat 964.070 kb on + strandat 964.256 kb on - strandat 964.322 kb on + strandat 964.322 kb on + strandat 964.340 kb on - strand, within MIT1002_00873at 964.340 kb on - strand, within MIT1002_00873at 964.437 kb on + strand, within MIT1002_00873at 964.473 kb on + strand, within MIT1002_00873at 964.481 kb on - strand, within MIT1002_00873at 964.487 kb on - strand, within MIT1002_00873at 964.514 kb on - strand, within MIT1002_00873at 964.591 kb on - strand, within MIT1002_00873at 964.614 kb on - strand, within MIT1002_00873at 964.659 kb on + strand, within MIT1002_00873at 964.680 kb on + strand, within MIT1002_00873at 964.686 kb on - strand, within MIT1002_00873at 964.693 kb on - strand, within MIT1002_00873at 964.717 kb on + strand, within MIT1002_00873at 964.717 kb on + strand, within MIT1002_00873at 964.717 kb on + strand, within MIT1002_00873at 964.717 kb on + strand, within MIT1002_00873at 964.725 kb on - strand, within MIT1002_00873at 964.744 kb on + strandat 964.757 kb on - strandat 964.772 kb on - strandat 964.792 kb on + strandat 964.844 kb on - strandat 964.858 kb on - strandat 964.894 kb on + strandat 964.910 kb on + strandat 964.918 kb on + strandat 964.920 kb on + strandat 964.920 kb on + strandat 964.926 kb on - strandat 964.926 kb on - strandat 964.926 kb on - strandat 965.005 kb on - strandat 965.060 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
remove
961,087 - MIT1002_00871 0.41 +0.9
961,119 - MIT1002_00871 0.44 +0.9
961,191 + MIT1002_00871 0.48 -0.2
961,284 + MIT1002_00871 0.54 -0.4
961,294 + MIT1002_00871 0.55 -1.3
961,328 + MIT1002_00871 0.57 -0.3
961,360 - MIT1002_00871 0.59 +1.9
961,409 - MIT1002_00871 0.62 -1.0
961,470 + MIT1002_00871 0.66 -1.0
961,478 - MIT1002_00871 0.66 -0.7
961,510 + MIT1002_00871 0.69 -0.1
961,557 - MIT1002_00871 0.72 -1.0
961,566 + MIT1002_00871 0.72 -0.3
961,782 + MIT1002_00871 0.86 +0.2
961,870 - -1.8
961,941 - -0.7
962,027 + -0.1
962,108 + -2.7
962,108 + +0.7
962,182 + -1.0
962,190 - -0.4
962,190 - -0.7
962,191 - +0.3
962,213 - -1.9
962,261 + MIT1002_00872 0.12 -0.4
962,267 - MIT1002_00872 0.12 -1.4
962,374 + MIT1002_00872 0.17 -0.9
962,400 + MIT1002_00872 0.18 -2.5
962,435 + MIT1002_00872 0.20 -2.1
962,506 + MIT1002_00872 0.24 -1.5
962,619 - MIT1002_00872 0.29 -1.5
962,679 + MIT1002_00872 0.32 -2.6
962,679 + MIT1002_00872 0.32 -1.2
962,706 + MIT1002_00872 0.33 -2.6
962,744 + MIT1002_00872 0.35 +0.7
962,744 + MIT1002_00872 0.35 +0.3
962,752 - MIT1002_00872 0.35 -1.7
962,813 + MIT1002_00872 0.38 -1.3
962,821 - MIT1002_00872 0.39 -0.9
962,829 + MIT1002_00872 0.39 -1.3
962,837 - MIT1002_00872 0.40 +0.0
962,909 + MIT1002_00872 0.43 +0.8
962,917 - MIT1002_00872 0.43 -2.6
962,917 - MIT1002_00872 0.43 -2.0
963,041 + MIT1002_00872 0.49 +1.2
963,043 + MIT1002_00872 0.49 +0.3
963,048 + MIT1002_00872 0.50 -3.8
963,053 + MIT1002_00872 0.50 -3.3
963,053 + MIT1002_00872 0.50 -1.1
963,056 + MIT1002_00872 0.50 -0.1
963,056 - MIT1002_00872 0.50 -1.9
963,056 - MIT1002_00872 0.50 -1.5
963,056 - MIT1002_00872 0.50 -1.1
963,056 - MIT1002_00872 0.50 -0.3
963,060 + MIT1002_00872 0.50 +0.0
963,061 - MIT1002_00872 0.50 +0.3
963,068 - MIT1002_00872 0.51 -1.7
963,103 - MIT1002_00872 0.52 -3.3
963,116 + MIT1002_00872 0.53 +0.5
963,197 + MIT1002_00872 0.57 +0.2
963,202 + MIT1002_00872 0.57 -1.6
963,202 + MIT1002_00872 0.57 -1.0
963,208 - MIT1002_00872 0.57 +0.7
963,219 + MIT1002_00872 0.58 -0.5
963,227 - MIT1002_00872 0.58 -1.3
963,261 - MIT1002_00872 0.60 -0.6
963,322 + MIT1002_00872 0.63 +0.9
963,330 + MIT1002_00872 0.63 -0.6
963,330 - MIT1002_00872 0.63 -2.3
963,560 - MIT1002_00872 0.74 -1.4
963,649 - MIT1002_00872 0.79 -1.3
963,831 + MIT1002_00872 0.87 -0.9
963,873 - MIT1002_00872 0.89 -2.5
963,922 + -1.4
964,070 + -0.4
964,070 + -1.8
964,256 - +0.0
964,322 + -1.3
964,322 + -0.8
964,340 - MIT1002_00873 0.12 +1.5
964,340 - MIT1002_00873 0.12 -1.9
964,437 + MIT1002_00873 0.31 +1.2
964,473 + MIT1002_00873 0.38 -0.7
964,481 - MIT1002_00873 0.40 +1.7
964,487 - MIT1002_00873 0.41 +0.4
964,514 - MIT1002_00873 0.47 +1.4
964,591 - MIT1002_00873 0.62 +0.3
964,614 - MIT1002_00873 0.66 -0.1
964,659 + MIT1002_00873 0.75 -0.6
964,680 + MIT1002_00873 0.79 -0.9
964,686 - MIT1002_00873 0.80 +0.7
964,693 - MIT1002_00873 0.82 +0.5
964,717 + MIT1002_00873 0.87 -2.1
964,717 + MIT1002_00873 0.87 -1.5
964,717 + MIT1002_00873 0.87 -0.4
964,717 + MIT1002_00873 0.87 +0.7
964,725 - MIT1002_00873 0.88 -0.0
964,744 + -1.7
964,757 - -1.2
964,772 - +1.1
964,792 + +0.1
964,844 - -0.5
964,858 - +0.7
964,894 + +0.6
964,910 + -0.4
964,918 + -0.9
964,920 + +1.0
964,920 + -0.6
964,926 - -2.3
964,926 - -0.1
964,926 - +0.2
965,005 - -0.5
965,060 - -1.6

Or see this region's nucleotide sequence