Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00867 and MIT1002_00868 overlap by 11 nucleotides MIT1002_00868 and MIT1002_00869 are separated by 106 nucleotides MIT1002_00869 and MIT1002_00870 are separated by 228 nucleotides
MIT1002_00867: MIT1002_00867 - Efflux pump membrane transporter BepE, at 952,738 to 955,923
_00867
MIT1002_00868: MIT1002_00868 - Toluene efflux pump outer membrane protein TtgF precursor, at 955,913 to 957,391
_00868
MIT1002_00869: MIT1002_00869 - hypothetical protein, at 957,498 to 957,953
_00869
MIT1002_00870: MIT1002_00870 - Prolyl tripeptidyl peptidase precursor, at 958,182 to 960,308
_00870
Position (kb) 955
956
957
958 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 954.961 kb on - strand, within MIT1002_00867 at 954.978 kb on - strand, within MIT1002_00867 at 955.081 kb on - strand, within MIT1002_00867 at 955.125 kb on + strand, within MIT1002_00867 at 955.127 kb on - strand, within MIT1002_00867 at 955.153 kb on - strand, within MIT1002_00867 at 955.155 kb on + strand, within MIT1002_00867 at 955.155 kb on + strand, within MIT1002_00867 at 955.188 kb on + strand, within MIT1002_00867 at 955.202 kb on - strand, within MIT1002_00867 at 955.224 kb on + strand, within MIT1002_00867 at 955.224 kb on + strand, within MIT1002_00867 at 955.232 kb on - strand, within MIT1002_00867 at 955.232 kb on - strand, within MIT1002_00867 at 955.234 kb on + strand, within MIT1002_00867 at 955.234 kb on + strand, within MIT1002_00867 at 955.234 kb on + strand, within MIT1002_00867 at 955.234 kb on + strand, within MIT1002_00867 at 955.236 kb on + strand, within MIT1002_00867 at 955.242 kb on - strand, within MIT1002_00867 at 955.242 kb on - strand, within MIT1002_00867 at 955.242 kb on - strand, within MIT1002_00867 at 955.288 kb on - strand, within MIT1002_00867 at 955.299 kb on + strand, within MIT1002_00867 at 955.335 kb on + strand, within MIT1002_00867 at 955.383 kb on - strand, within MIT1002_00867 at 955.408 kb on + strand, within MIT1002_00867 at 955.418 kb on - strand, within MIT1002_00867 at 955.430 kb on - strand, within MIT1002_00867 at 955.490 kb on + strand, within MIT1002_00867 at 955.490 kb on + strand, within MIT1002_00867 at 955.602 kb on + strand, within MIT1002_00867 at 955.770 kb on + strand at 955.773 kb on - strand at 955.780 kb on + strand at 955.799 kb on + strand at 955.836 kb on + strand at 955.903 kb on + strand at 955.950 kb on + strand at 955.950 kb on + strand at 955.950 kb on + strand at 955.955 kb on + strand at 955.962 kb on + strand at 955.981 kb on + strand at 955.984 kb on - strand at 955.989 kb on - strand at 955.989 kb on - strand at 955.989 kb on - strand at 955.989 kb on - strand at 955.994 kb on - strand at 955.994 kb on - strand at 955.994 kb on - strand at 955.994 kb on - strand at 956.014 kb on + strand at 956.021 kb on - strand at 956.031 kb on - strand at 956.090 kb on - strand, within MIT1002_00868 at 956.090 kb on - strand, within MIT1002_00868 at 956.132 kb on - strand, within MIT1002_00868 at 956.141 kb on - strand, within MIT1002_00868 at 956.173 kb on - strand, within MIT1002_00868 at 956.175 kb on + strand, within MIT1002_00868 at 956.225 kb on + strand, within MIT1002_00868 at 956.233 kb on - strand, within MIT1002_00868 at 956.262 kb on + strand, within MIT1002_00868 at 956.335 kb on - strand, within MIT1002_00868 at 956.373 kb on + strand, within MIT1002_00868 at 956.382 kb on - strand, within MIT1002_00868 at 956.430 kb on - strand, within MIT1002_00868 at 956.441 kb on - strand, within MIT1002_00868 at 956.450 kb on + strand, within MIT1002_00868 at 956.503 kb on + strand, within MIT1002_00868 at 956.523 kb on + strand, within MIT1002_00868 at 956.583 kb on + strand, within MIT1002_00868 at 956.584 kb on + strand, within MIT1002_00868 at 956.584 kb on + strand, within MIT1002_00868 at 956.592 kb on - strand, within MIT1002_00868 at 956.609 kb on - strand, within MIT1002_00868 at 956.727 kb on + strand, within MIT1002_00868 at 956.751 kb on + strand, within MIT1002_00868 at 956.759 kb on - strand, within MIT1002_00868 at 956.780 kb on - strand, within MIT1002_00868 at 956.788 kb on - strand, within MIT1002_00868 at 956.788 kb on - strand, within MIT1002_00868 at 956.788 kb on - strand, within MIT1002_00868 at 956.793 kb on - strand, within MIT1002_00868 at 956.805 kb on - strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.824 kb on - strand, within MIT1002_00868 at 956.824 kb on - strand, within MIT1002_00868 at 956.831 kb on + strand, within MIT1002_00868 at 956.831 kb on - strand, within MIT1002_00868 at 956.957 kb on + strand, within MIT1002_00868 at 956.965 kb on - strand, within MIT1002_00868 at 956.965 kb on - strand, within MIT1002_00868 at 956.984 kb on - strand, within MIT1002_00868 at 957.040 kb on + strand, within MIT1002_00868 at 957.048 kb on - strand, within MIT1002_00868 at 957.286 kb on + strand at 957.302 kb on - strand at 957.313 kb on + strand at 957.480 kb on + strand at 957.481 kb on - strand at 957.650 kb on + strand, within MIT1002_00869 at 957.662 kb on + strand, within MIT1002_00869 at 957.786 kb on + strand, within MIT1002_00869 at 957.799 kb on + strand, within MIT1002_00869 at 957.837 kb on + strand, within MIT1002_00869 at 957.897 kb on - strand, within MIT1002_00869 at 957.956 kb on + strand at 957.957 kb on + strand at 957.975 kb on + strand at 957.976 kb on - strand at 958.028 kb on + strand at 958.028 kb on + strand at 958.028 kb on + strand at 958.028 kb on + strand at 958.031 kb on + strand at 958.036 kb on - strand at 958.036 kb on - strand at 958.036 kb on - strand at 958.036 kb on - strand at 958.075 kb on - strand at 958.242 kb on + strand at 958.250 kb on - strand at 958.255 kb on - strand at 958.292 kb on + strand at 958.372 kb on + strand at 958.372 kb on + strand at 958.382 kb on - strand at 958.382 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 954,961 - MIT1002_00867 0.70 -0.4 954,978 - MIT1002_00867 0.70 +1.2 955,081 - MIT1002_00867 0.74 +1.3 955,125 + MIT1002_00867 0.75 -0.1 955,127 - MIT1002_00867 0.75 -0.7 955,153 - MIT1002_00867 0.76 -1.4 955,155 + MIT1002_00867 0.76 -1.4 955,155 + MIT1002_00867 0.76 +0.0 955,188 + MIT1002_00867 0.77 -1.1 955,202 - MIT1002_00867 0.77 +0.3 955,224 + MIT1002_00867 0.78 -0.1 955,224 + MIT1002_00867 0.78 +0.5 955,232 - MIT1002_00867 0.78 +0.4 955,232 - MIT1002_00867 0.78 +1.0 955,234 + MIT1002_00867 0.78 -0.6 955,234 + MIT1002_00867 0.78 -0.3 955,234 + MIT1002_00867 0.78 +0.2 955,234 + MIT1002_00867 0.78 -0.1 955,236 + MIT1002_00867 0.78 -3.0 955,242 - MIT1002_00867 0.79 +0.3 955,242 - MIT1002_00867 0.79 +0.9 955,242 - MIT1002_00867 0.79 -1.6 955,288 - MIT1002_00867 0.80 -1.7 955,299 + MIT1002_00867 0.80 -0.5 955,335 + MIT1002_00867 0.82 +2.0 955,383 - MIT1002_00867 0.83 -1.1 955,408 + MIT1002_00867 0.84 -1.4 955,418 - MIT1002_00867 0.84 +1.0 955,430 - MIT1002_00867 0.84 +0.5 955,490 + MIT1002_00867 0.86 -0.1 955,490 + MIT1002_00867 0.86 +0.9 955,602 + MIT1002_00867 0.90 -0.8 955,770 + -1.0 955,773 - -0.4 955,780 + -0.2 955,799 + -0.2 955,836 + -2.4 955,903 + +0.9 955,950 + +1.6 955,950 + -0.7 955,950 + -0.6 955,955 + +1.5 955,962 + -0.7 955,981 + -2.4 955,984 - -0.6 955,989 - +1.2 955,989 - +0.7 955,989 - -2.2 955,989 - +0.1 955,994 - -0.5 955,994 - +0.5 955,994 - -2.9 955,994 - -0.1 956,014 + -1.7 956,021 - +0.3 956,031 - -1.0 956,090 - MIT1002_00868 0.12 -1.3 956,090 - MIT1002_00868 0.12 +0.4 956,132 - MIT1002_00868 0.15 -0.1 956,141 - MIT1002_00868 0.15 +0.4 956,173 - MIT1002_00868 0.18 -1.1 956,175 + MIT1002_00868 0.18 +0.0 956,225 + MIT1002_00868 0.21 +0.2 956,233 - MIT1002_00868 0.22 +0.2 956,262 + MIT1002_00868 0.24 -1.9 956,335 - MIT1002_00868 0.29 +0.3 956,373 + MIT1002_00868 0.31 +1.2 956,382 - MIT1002_00868 0.32 +0.2 956,430 - MIT1002_00868 0.35 -0.5 956,441 - MIT1002_00868 0.36 -1.5 956,450 + MIT1002_00868 0.36 +0.1 956,503 + MIT1002_00868 0.40 +0.5 956,523 + MIT1002_00868 0.41 -0.6 956,583 + MIT1002_00868 0.45 -1.0 956,584 + MIT1002_00868 0.45 +0.4 956,584 + MIT1002_00868 0.45 +0.3 956,592 - MIT1002_00868 0.46 -0.1 956,609 - MIT1002_00868 0.47 -1.1 956,727 + MIT1002_00868 0.55 +1.0 956,751 + MIT1002_00868 0.57 -2.4 956,759 - MIT1002_00868 0.57 -0.9 956,780 - MIT1002_00868 0.59 +0.1 956,788 - MIT1002_00868 0.59 +2.2 956,788 - MIT1002_00868 0.59 +1.9 956,788 - MIT1002_00868 0.59 -0.5 956,793 - MIT1002_00868 0.59 +0.6 956,805 - MIT1002_00868 0.60 -0.3 956,816 + MIT1002_00868 0.61 -1.1 956,816 + MIT1002_00868 0.61 +0.0 956,816 + MIT1002_00868 0.61 +2.4 956,816 + MIT1002_00868 0.61 -1.5 956,816 + MIT1002_00868 0.61 -0.5 956,824 - MIT1002_00868 0.62 -1.5 956,824 - MIT1002_00868 0.62 +0.3 956,831 + MIT1002_00868 0.62 +0.8 956,831 - MIT1002_00868 0.62 -1.2 956,957 + MIT1002_00868 0.71 +0.9 956,965 - MIT1002_00868 0.71 -2.5 956,965 - MIT1002_00868 0.71 -2.1 956,984 - MIT1002_00868 0.72 -2.5 957,040 + MIT1002_00868 0.76 +0.7 957,048 - MIT1002_00868 0.77 +0.3 957,286 + -1.2 957,302 - +1.6 957,313 + +2.1 957,480 + -0.3 957,481 - +0.4 957,650 + MIT1002_00869 0.33 -1.2 957,662 + MIT1002_00869 0.36 +0.1 957,786 + MIT1002_00869 0.63 -0.5 957,799 + MIT1002_00869 0.66 +0.0 957,837 + MIT1002_00869 0.74 +0.7 957,897 - MIT1002_00869 0.88 -1.1 957,956 + -1.4 957,957 + +1.6 957,975 + +1.2 957,976 - +0.5 958,028 + -1.0 958,028 + -0.9 958,028 + +0.5 958,028 + -0.5 958,031 + +1.6 958,036 - +0.4 958,036 - -0.9 958,036 - +0.3 958,036 - +0.2 958,075 - +1.0 958,242 + +0.9 958,250 - -0.1 958,255 - +1.9 958,292 + -1.0 958,372 + +1.1 958,372 + +0.2 958,382 - -1.6 958,382 - -0.2
Or see this region's nucleotide sequence