Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00786

Experiment: monoculture; Experiment C, time point 5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00785 and MIT1002_00786 are separated by 0 nucleotidesMIT1002_00786 and MIT1002_00787 are separated by 358 nucleotides MIT1002_00785: MIT1002_00785 - DnaJ-like protein DjlA, at 870,219 to 871,079 _00785 MIT1002_00786: MIT1002_00786 - Tyrosine recombinase XerD, at 871,080 to 872,006 _00786 MIT1002_00787: MIT1002_00787 - Thiol:disulfide interchange protein DsbC precursor, at 872,365 to 873,087 _00787 Position (kb) 871 872 873Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 870.095 kb on + strandat 870.095 kb on + strandat 870.095 kb on + strandat 870.103 kb on - strandat 870.140 kb on + strandat 870.148 kb on - strandat 870.196 kb on + strandat 870.209 kb on + strandat 870.254 kb on - strandat 870.372 kb on + strand, within MIT1002_00785at 870.385 kb on - strand, within MIT1002_00785at 870.416 kb on + strand, within MIT1002_00785at 870.486 kb on + strand, within MIT1002_00785at 870.503 kb on + strand, within MIT1002_00785at 870.584 kb on + strand, within MIT1002_00785at 870.584 kb on + strand, within MIT1002_00785at 870.592 kb on - strand, within MIT1002_00785at 870.672 kb on + strand, within MIT1002_00785at 870.684 kb on - strand, within MIT1002_00785at 870.727 kb on + strand, within MIT1002_00785at 870.794 kb on + strand, within MIT1002_00785at 870.802 kb on - strand, within MIT1002_00785at 870.802 kb on - strand, within MIT1002_00785at 870.802 kb on - strand, within MIT1002_00785at 870.810 kb on + strand, within MIT1002_00785at 870.810 kb on + strand, within MIT1002_00785at 870.810 kb on + strand, within MIT1002_00785at 870.813 kb on - strand, within MIT1002_00785at 870.813 kb on - strand, within MIT1002_00785at 870.856 kb on + strand, within MIT1002_00785at 870.859 kb on - strand, within MIT1002_00785at 870.879 kb on - strand, within MIT1002_00785at 870.898 kb on - strand, within MIT1002_00785at 870.898 kb on - strand, within MIT1002_00785at 870.925 kb on + strand, within MIT1002_00785at 870.967 kb on - strand, within MIT1002_00785at 870.988 kb on - strand, within MIT1002_00785at 870.993 kb on + strand, within MIT1002_00785at 871.154 kb on + strandat 871.175 kb on + strand, within MIT1002_00786at 871.188 kb on + strand, within MIT1002_00786at 871.196 kb on - strand, within MIT1002_00786at 871.262 kb on + strand, within MIT1002_00786at 871.262 kb on + strand, within MIT1002_00786at 871.267 kb on + strand, within MIT1002_00786at 871.267 kb on + strand, within MIT1002_00786at 871.268 kb on - strand, within MIT1002_00786at 871.268 kb on - strand, within MIT1002_00786at 871.275 kb on - strand, within MIT1002_00786at 871.275 kb on - strand, within MIT1002_00786at 871.277 kb on + strand, within MIT1002_00786at 871.311 kb on + strand, within MIT1002_00786at 871.311 kb on + strand, within MIT1002_00786at 871.319 kb on - strand, within MIT1002_00786at 871.348 kb on - strand, within MIT1002_00786at 871.415 kb on + strand, within MIT1002_00786at 871.436 kb on + strand, within MIT1002_00786at 871.467 kb on + strand, within MIT1002_00786at 871.494 kb on + strand, within MIT1002_00786at 871.501 kb on + strand, within MIT1002_00786at 871.560 kb on - strand, within MIT1002_00786at 871.590 kb on - strand, within MIT1002_00786at 871.597 kb on + strand, within MIT1002_00786at 871.725 kb on - strand, within MIT1002_00786at 871.726 kb on + strand, within MIT1002_00786at 871.758 kb on - strand, within MIT1002_00786at 871.837 kb on - strand, within MIT1002_00786at 871.895 kb on - strand, within MIT1002_00786at 871.910 kb on + strand, within MIT1002_00786at 871.948 kb on + strandat 871.948 kb on + strandat 871.975 kb on - strandat 871.987 kb on + strandat 872.050 kb on + strandat 872.091 kb on + strandat 872.091 kb on + strandat 872.092 kb on + strandat 872.234 kb on + strandat 872.242 kb on - strandat 872.307 kb on + strandat 872.307 kb on + strandat 872.327 kb on + strandat 872.335 kb on - strandat 872.431 kb on - strandat 872.449 kb on + strand, within MIT1002_00787at 872.506 kb on - strand, within MIT1002_00787at 872.535 kb on - strand, within MIT1002_00787at 872.540 kb on - strand, within MIT1002_00787at 872.581 kb on - strand, within MIT1002_00787at 872.806 kb on + strand, within MIT1002_00787at 872.811 kb on - strand, within MIT1002_00787at 872.814 kb on - strand, within MIT1002_00787at 872.833 kb on + strand, within MIT1002_00787at 872.833 kb on + strand, within MIT1002_00787at 872.833 kb on + strand, within MIT1002_00787at 872.833 kb on + strand, within MIT1002_00787at 872.833 kb on + strand, within MIT1002_00787at 872.868 kb on + strand, within MIT1002_00787at 872.972 kb on - strand, within MIT1002_00787

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
remove
870,095 + -0.7
870,095 + +0.3
870,095 + -0.5
870,103 - +0.4
870,140 + +0.3
870,148 - -0.1
870,196 + -2.2
870,209 + +0.3
870,254 - -0.7
870,372 + MIT1002_00785 0.18 +0.0
870,385 - MIT1002_00785 0.19 -1.1
870,416 + MIT1002_00785 0.23 +0.5
870,486 + MIT1002_00785 0.31 -0.6
870,503 + MIT1002_00785 0.33 +0.9
870,584 + MIT1002_00785 0.42 +0.0
870,584 + MIT1002_00785 0.42 +1.0
870,592 - MIT1002_00785 0.43 +0.3
870,672 + MIT1002_00785 0.53 -0.3
870,684 - MIT1002_00785 0.54 +1.2
870,727 + MIT1002_00785 0.59 -0.6
870,794 + MIT1002_00785 0.67 -2.2
870,802 - MIT1002_00785 0.68 -1.2
870,802 - MIT1002_00785 0.68 -0.8
870,802 - MIT1002_00785 0.68 -1.1
870,810 + MIT1002_00785 0.69 -1.0
870,810 + MIT1002_00785 0.69 +0.2
870,810 + MIT1002_00785 0.69 +1.2
870,813 - MIT1002_00785 0.69 -3.1
870,813 - MIT1002_00785 0.69 -1.3
870,856 + MIT1002_00785 0.74 -0.4
870,859 - MIT1002_00785 0.74 -0.7
870,879 - MIT1002_00785 0.77 +1.5
870,898 - MIT1002_00785 0.79 +1.1
870,898 - MIT1002_00785 0.79 -0.7
870,925 + MIT1002_00785 0.82 +1.2
870,967 - MIT1002_00785 0.87 +0.2
870,988 - MIT1002_00785 0.89 -1.9
870,993 + MIT1002_00785 0.90 -0.4
871,154 + -0.3
871,175 + MIT1002_00786 0.10 +0.8
871,188 + MIT1002_00786 0.12 -0.5
871,196 - MIT1002_00786 0.13 -0.2
871,262 + MIT1002_00786 0.20 -0.5
871,262 + MIT1002_00786 0.20 +0.7
871,267 + MIT1002_00786 0.20 -0.1
871,267 + MIT1002_00786 0.20 +1.3
871,268 - MIT1002_00786 0.20 -0.4
871,268 - MIT1002_00786 0.20 -0.3
871,275 - MIT1002_00786 0.21 -0.9
871,275 - MIT1002_00786 0.21 +0.1
871,277 + MIT1002_00786 0.21 -1.1
871,311 + MIT1002_00786 0.25 -1.1
871,311 + MIT1002_00786 0.25 -0.2
871,319 - MIT1002_00786 0.26 -1.1
871,348 - MIT1002_00786 0.29 +0.7
871,415 + MIT1002_00786 0.36 +0.9
871,436 + MIT1002_00786 0.38 -0.6
871,467 + MIT1002_00786 0.42 -0.6
871,494 + MIT1002_00786 0.45 +1.5
871,501 + MIT1002_00786 0.45 -0.9
871,560 - MIT1002_00786 0.52 +0.6
871,590 - MIT1002_00786 0.55 -2.0
871,597 + MIT1002_00786 0.56 -0.2
871,725 - MIT1002_00786 0.70 -0.7
871,726 + MIT1002_00786 0.70 +0.0
871,758 - MIT1002_00786 0.73 +0.9
871,837 - MIT1002_00786 0.82 -1.8
871,895 - MIT1002_00786 0.88 -0.5
871,910 + MIT1002_00786 0.90 -1.3
871,948 + +0.3
871,948 + -0.1
871,975 - +0.4
871,987 + +0.7
872,050 + -1.1
872,091 + -1.6
872,091 + +0.0
872,092 + +0.2
872,234 + +0.4
872,242 - -0.3
872,307 + -0.3
872,307 + -1.8
872,327 + +0.9
872,335 - -1.6
872,431 - -1.3
872,449 + MIT1002_00787 0.12 +0.6
872,506 - MIT1002_00787 0.20 -1.4
872,535 - MIT1002_00787 0.24 +1.4
872,540 - MIT1002_00787 0.24 -1.1
872,581 - MIT1002_00787 0.30 +0.3
872,806 + MIT1002_00787 0.61 -0.1
872,811 - MIT1002_00787 0.62 -0.5
872,814 - MIT1002_00787 0.62 -1.2
872,833 + MIT1002_00787 0.65 -1.1
872,833 + MIT1002_00787 0.65 -0.7
872,833 + MIT1002_00787 0.65 -0.6
872,833 + MIT1002_00787 0.65 -0.2
872,833 + MIT1002_00787 0.65 +0.9
872,868 + MIT1002_00787 0.70 +0.1
872,972 - MIT1002_00787 0.84 +2.7

Or see this region's nucleotide sequence