Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00768 and MIT1002_00769 are separated by 104 nucleotides MIT1002_00769 and MIT1002_00770 are separated by 250 nucleotides
MIT1002_00768: MIT1002_00768 - Aconitate hydratase 2, at 846,312 to 849,122
_00768
MIT1002_00769: MIT1002_00769 - Transposase, at 849,227 to 850,423
_00769
MIT1002_00770: MIT1002_00770 - Signal transduction histidine-protein kinase BarA, at 850,674 to 852,386
_00770
Position (kb) 849
850
851 Strain fitness (log2 ratio) -2
-1
0
1
2 at 848.422 kb on - strand, within MIT1002_00768 at 848.432 kb on - strand, within MIT1002_00768 at 848.501 kb on + strand, within MIT1002_00768 at 848.765 kb on + strand, within MIT1002_00768 at 848.779 kb on - strand, within MIT1002_00768 at 848.812 kb on + strand, within MIT1002_00768 at 848.820 kb on - strand, within MIT1002_00768 at 848.908 kb on + strand at 848.933 kb on + strand at 849.004 kb on + strand at 849.017 kb on - strand at 849.033 kb on - strand at 850.558 kb on + strand at 850.614 kb on + strand at 850.614 kb on + strand at 850.624 kb on - strand at 850.669 kb on + strand at 850.677 kb on - strand at 850.685 kb on + strand at 850.687 kb on + strand at 850.835 kb on + strand at 850.835 kb on + strand at 850.835 kb on + strand at 850.843 kb on - strand at 850.843 kb on - strand at 850.843 kb on - strand at 850.843 kb on - strand at 850.887 kb on - strand, within MIT1002_00770 at 850.911 kb on - strand, within MIT1002_00770 at 850.974 kb on - strand, within MIT1002_00770 at 851.003 kb on + strand, within MIT1002_00770 at 851.011 kb on - strand, within MIT1002_00770 at 851.033 kb on + strand, within MIT1002_00770 at 851.040 kb on + strand, within MIT1002_00770 at 851.041 kb on - strand, within MIT1002_00770 at 851.079 kb on + strand, within MIT1002_00770 at 851.098 kb on + strand, within MIT1002_00770 at 851.104 kb on + strand, within MIT1002_00770 at 851.106 kb on - strand, within MIT1002_00770 at 851.119 kb on + strand, within MIT1002_00770 at 851.119 kb on + strand, within MIT1002_00770 at 851.127 kb on - strand, within MIT1002_00770 at 851.127 kb on - strand, within MIT1002_00770 at 851.127 kb on - strand, within MIT1002_00770 at 851.127 kb on - strand, within MIT1002_00770 at 851.148 kb on + strand, within MIT1002_00770 at 851.170 kb on + strand, within MIT1002_00770 at 851.178 kb on - strand, within MIT1002_00770 at 851.202 kb on - strand, within MIT1002_00770 at 851.286 kb on + strand, within MIT1002_00770 at 851.294 kb on - strand, within MIT1002_00770 at 851.322 kb on - strand, within MIT1002_00770 at 851.322 kb on - strand, within MIT1002_00770 at 851.344 kb on + strand, within MIT1002_00770 at 851.344 kb on + strand, within MIT1002_00770 at 851.344 kb on + strand, within MIT1002_00770 at 851.351 kb on + strand, within MIT1002_00770 at 851.351 kb on + strand, within MIT1002_00770 at 851.352 kb on - strand, within MIT1002_00770 at 851.359 kb on - strand, within MIT1002_00770 at 851.359 kb on - strand, within MIT1002_00770 at 851.359 kb on - strand, within MIT1002_00770 at 851.409 kb on + strand, within MIT1002_00770 at 851.418 kb on - strand, within MIT1002_00770
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 848,422 - MIT1002_00768 0.75 +0.7 848,432 - MIT1002_00768 0.75 +2.5 848,501 + MIT1002_00768 0.78 -1.2 848,765 + MIT1002_00768 0.87 -0.5 848,779 - MIT1002_00768 0.88 -2.6 848,812 + MIT1002_00768 0.89 -0.5 848,820 - MIT1002_00768 0.89 -1.3 848,908 + -0.6 848,933 + +0.2 849,004 + -0.6 849,017 - -0.7 849,033 - -1.3 850,558 + +0.8 850,614 + -1.5 850,614 + -0.4 850,624 - +1.7 850,669 + +2.1 850,677 - -1.7 850,685 + +2.5 850,687 + -0.7 850,835 + +0.9 850,835 + -0.7 850,835 + -1.3 850,843 - +1.1 850,843 - +0.5 850,843 - +0.7 850,843 - +0.2 850,887 - MIT1002_00770 0.12 +1.5 850,911 - MIT1002_00770 0.14 -0.2 850,974 - MIT1002_00770 0.18 -0.2 851,003 + MIT1002_00770 0.19 -0.1 851,011 - MIT1002_00770 0.20 -0.6 851,033 + MIT1002_00770 0.21 -1.6 851,040 + MIT1002_00770 0.21 -0.4 851,041 - MIT1002_00770 0.21 +0.6 851,079 + MIT1002_00770 0.24 -0.9 851,098 + MIT1002_00770 0.25 +0.5 851,104 + MIT1002_00770 0.25 +0.3 851,106 - MIT1002_00770 0.25 -0.5 851,119 + MIT1002_00770 0.26 +0.3 851,119 + MIT1002_00770 0.26 -0.4 851,127 - MIT1002_00770 0.26 -0.9 851,127 - MIT1002_00770 0.26 -0.7 851,127 - MIT1002_00770 0.26 -0.5 851,127 - MIT1002_00770 0.26 +0.2 851,148 + MIT1002_00770 0.28 -0.0 851,170 + MIT1002_00770 0.29 -0.1 851,178 - MIT1002_00770 0.29 -0.8 851,202 - MIT1002_00770 0.31 +0.4 851,286 + MIT1002_00770 0.36 -0.4 851,294 - MIT1002_00770 0.36 -0.2 851,322 - MIT1002_00770 0.38 +1.5 851,322 - MIT1002_00770 0.38 -1.0 851,344 + MIT1002_00770 0.39 -0.4 851,344 + MIT1002_00770 0.39 +0.5 851,344 + MIT1002_00770 0.39 +1.0 851,351 + MIT1002_00770 0.40 +1.2 851,351 + MIT1002_00770 0.40 -1.3 851,352 - MIT1002_00770 0.40 -0.0 851,359 - MIT1002_00770 0.40 -0.5 851,359 - MIT1002_00770 0.40 -1.4 851,359 - MIT1002_00770 0.40 +1.2 851,409 + MIT1002_00770 0.43 +0.4 851,418 - MIT1002_00770 0.43 +0.2
Or see this region's nucleotide sequence