Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00759

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00758 and MIT1002_00759 are separated by 2 nucleotidesMIT1002_00759 and MIT1002_00760 are separated by 32 nucleotidesMIT1002_00760 and MIT1002_00761 are separated by 3 nucleotides MIT1002_00758: MIT1002_00758 - Biopolymer transport protein ExbB, at 834,196 to 835,560 _00758 MIT1002_00759: MIT1002_00759 - protein TolQ, at 835,563 to 836,081 _00759 MIT1002_00760: MIT1002_00760 - Biopolymer transport protein ExbD, at 836,114 to 836,521 _00760 MIT1002_00761: MIT1002_00761 - transport protein TonB, at 836,525 to 837,133 _00761 Position (kb) 835 836 837Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 834.582 kb on - strand, within MIT1002_00758at 834.642 kb on - strand, within MIT1002_00758at 834.648 kb on - strand, within MIT1002_00758at 834.738 kb on + strand, within MIT1002_00758at 834.746 kb on - strand, within MIT1002_00758at 834.746 kb on - strand, within MIT1002_00758at 834.785 kb on - strand, within MIT1002_00758at 834.835 kb on + strand, within MIT1002_00758at 834.835 kb on + strand, within MIT1002_00758at 834.843 kb on - strand, within MIT1002_00758at 834.869 kb on - strand, within MIT1002_00758at 834.942 kb on + strand, within MIT1002_00758at 834.950 kb on - strand, within MIT1002_00758at 834.961 kb on - strand, within MIT1002_00758at 834.977 kb on + strand, within MIT1002_00758at 834.985 kb on - strand, within MIT1002_00758at 834.998 kb on + strand, within MIT1002_00758at 834.998 kb on + strand, within MIT1002_00758at 835.000 kb on + strand, within MIT1002_00758at 835.000 kb on + strand, within MIT1002_00758at 835.000 kb on + strand, within MIT1002_00758at 835.000 kb on + strand, within MIT1002_00758at 835.010 kb on + strand, within MIT1002_00758at 835.010 kb on + strand, within MIT1002_00758at 835.010 kb on + strand, within MIT1002_00758at 835.015 kb on + strand, within MIT1002_00758at 835.015 kb on + strand, within MIT1002_00758at 835.018 kb on - strand, within MIT1002_00758at 835.018 kb on - strand, within MIT1002_00758at 835.028 kb on - strand, within MIT1002_00758at 835.076 kb on + strand, within MIT1002_00758at 835.117 kb on - strand, within MIT1002_00758at 835.134 kb on + strand, within MIT1002_00758at 835.316 kb on - strand, within MIT1002_00758at 835.341 kb on + strand, within MIT1002_00758at 835.341 kb on + strand, within MIT1002_00758at 835.349 kb on - strand, within MIT1002_00758at 835.349 kb on - strand, within MIT1002_00758at 835.376 kb on - strand, within MIT1002_00758at 835.376 kb on - strand, within MIT1002_00758at 835.437 kb on - strandat 835.464 kb on + strandat 835.472 kb on - strandat 835.472 kb on - strandat 835.472 kb on - strandat 835.472 kb on - strandat 835.476 kb on + strandat 835.477 kb on - strandat 835.477 kb on - strandat 835.485 kb on - strandat 835.509 kb on - strandat 835.555 kb on + strandat 835.562 kb on - strandat 835.614 kb on + strandat 835.630 kb on - strand, within MIT1002_00759at 835.659 kb on + strand, within MIT1002_00759at 835.734 kb on - strand, within MIT1002_00759at 835.865 kb on - strand, within MIT1002_00759at 835.922 kb on - strand, within MIT1002_00759at 835.928 kb on - strand, within MIT1002_00759at 835.937 kb on + strand, within MIT1002_00759at 836.057 kb on - strandat 836.057 kb on - strandat 836.084 kb on - strandat 836.092 kb on + strandat 836.100 kb on - strandat 836.249 kb on - strand, within MIT1002_00760at 836.256 kb on + strand, within MIT1002_00760at 836.363 kb on + strand, within MIT1002_00760at 836.382 kb on - strand, within MIT1002_00760at 836.404 kb on + strand, within MIT1002_00760at 836.515 kb on - strandat 836.576 kb on - strandat 836.632 kb on + strand, within MIT1002_00761at 836.661 kb on + strand, within MIT1002_00761at 836.669 kb on - strand, within MIT1002_00761at 836.726 kb on - strand, within MIT1002_00761at 836.749 kb on + strand, within MIT1002_00761at 836.869 kb on - strand, within MIT1002_00761at 836.930 kb on - strand, within MIT1002_00761at 836.930 kb on - strand, within MIT1002_00761

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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834,582 - MIT1002_00758 0.28 -1.4
834,642 - MIT1002_00758 0.33 -2.0
834,648 - MIT1002_00758 0.33 -1.6
834,738 + MIT1002_00758 0.40 -1.9
834,746 - MIT1002_00758 0.40 -0.3
834,746 - MIT1002_00758 0.40 -2.3
834,785 - MIT1002_00758 0.43 -2.7
834,835 + MIT1002_00758 0.47 -1.2
834,835 + MIT1002_00758 0.47 -1.1
834,843 - MIT1002_00758 0.47 -1.4
834,869 - MIT1002_00758 0.49 -3.4
834,942 + MIT1002_00758 0.55 -0.3
834,950 - MIT1002_00758 0.55 -2.0
834,961 - MIT1002_00758 0.56 -1.5
834,977 + MIT1002_00758 0.57 -1.6
834,985 - MIT1002_00758 0.58 -1.9
834,998 + MIT1002_00758 0.59 +1.2
834,998 + MIT1002_00758 0.59 -0.9
835,000 + MIT1002_00758 0.59 -1.8
835,000 + MIT1002_00758 0.59 +0.0
835,000 + MIT1002_00758 0.59 -1.7
835,000 + MIT1002_00758 0.59 -4.6
835,010 + MIT1002_00758 0.60 -4.0
835,010 + MIT1002_00758 0.60 -0.6
835,010 + MIT1002_00758 0.60 -2.2
835,015 + MIT1002_00758 0.60 -2.2
835,015 + MIT1002_00758 0.60 -3.8
835,018 - MIT1002_00758 0.60 +1.5
835,018 - MIT1002_00758 0.60 -2.2
835,028 - MIT1002_00758 0.61 -1.0
835,076 + MIT1002_00758 0.64 -2.3
835,117 - MIT1002_00758 0.67 -3.1
835,134 + MIT1002_00758 0.69 -2.2
835,316 - MIT1002_00758 0.82 -1.4
835,341 + MIT1002_00758 0.84 -4.2
835,341 + MIT1002_00758 0.84 -5.1
835,349 - MIT1002_00758 0.84 -1.7
835,349 - MIT1002_00758 0.84 -1.2
835,376 - MIT1002_00758 0.86 -1.9
835,376 - MIT1002_00758 0.86 -2.0
835,437 - -3.6
835,464 + -1.2
835,472 - -5.1
835,472 - +0.3
835,472 - -2.9
835,472 - +1.5
835,476 + -3.9
835,477 - -7.1
835,477 - -0.8
835,485 - -1.9
835,509 - -1.8
835,555 + -2.7
835,562 - -2.7
835,614 + -6.6
835,630 - MIT1002_00759 0.13 -2.5
835,659 + MIT1002_00759 0.18 -0.9
835,734 - MIT1002_00759 0.33 -1.9
835,865 - MIT1002_00759 0.58 -5.8
835,922 - MIT1002_00759 0.69 -1.5
835,928 - MIT1002_00759 0.70 -0.9
835,937 + MIT1002_00759 0.72 -1.2
836,057 - -2.1
836,057 - -2.3
836,084 - -0.9
836,092 + -0.7
836,100 - -2.3
836,249 - MIT1002_00760 0.33 -2.2
836,256 + MIT1002_00760 0.35 -3.3
836,363 + MIT1002_00760 0.61 -2.3
836,382 - MIT1002_00760 0.66 -2.1
836,404 + MIT1002_00760 0.71 -0.9
836,515 - -3.0
836,576 - -4.8
836,632 + MIT1002_00761 0.18 -6.2
836,661 + MIT1002_00761 0.22 -2.4
836,669 - MIT1002_00761 0.24 -1.8
836,726 - MIT1002_00761 0.33 -0.3
836,749 + MIT1002_00761 0.37 +0.2
836,869 - MIT1002_00761 0.56 -2.5
836,930 - MIT1002_00761 0.67 -0.5
836,930 - MIT1002_00761 0.67 -2.7

Or see this region's nucleotide sequence