Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00673

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00671 and MIT1002_00672 overlap by 52 nucleotidesMIT1002_00672 and MIT1002_00673 overlap by 4 nucleotidesMIT1002_00673 and MIT1002_00674 are separated by 127 nucleotidesMIT1002_00674 and MIT1002_00675 are separated by 136 nucleotides MIT1002_00671: MIT1002_00671 - ADP-ribose pyrophosphatase, at 735,860 to 736,486 _00671 MIT1002_00672: MIT1002_00672 - putative dehydrogenase, at 736,435 to 736,923 _00672 MIT1002_00673: MIT1002_00673 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 736,920 to 737,723 _00673 MIT1002_00674: MIT1002_00674 - esterase YqiA, at 737,851 to 738,432 _00674 MIT1002_00675: MIT1002_00675 - DNA topoisomerase 4 subunit B, at 738,569 to 740,464 _00675 Position (kb) 736 737 738Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 735.993 kb on - strand, within MIT1002_00671at 736.020 kb on + strand, within MIT1002_00671at 736.020 kb on + strand, within MIT1002_00671at 736.094 kb on - strand, within MIT1002_00671at 736.139 kb on + strand, within MIT1002_00671at 736.161 kb on + strand, within MIT1002_00671at 736.176 kb on + strand, within MIT1002_00671at 736.177 kb on - strand, within MIT1002_00671at 736.186 kb on + strand, within MIT1002_00671at 736.186 kb on - strand, within MIT1002_00671at 736.198 kb on + strand, within MIT1002_00671at 736.237 kb on + strand, within MIT1002_00671at 736.299 kb on - strand, within MIT1002_00671at 736.321 kb on - strand, within MIT1002_00671at 736.367 kb on - strand, within MIT1002_00671at 736.421 kb on - strand, within MIT1002_00671at 736.469 kb on - strandat 736.471 kb on + strandat 736.497 kb on - strand, within MIT1002_00672at 736.553 kb on + strand, within MIT1002_00672at 736.556 kb on - strand, within MIT1002_00672at 736.561 kb on - strand, within MIT1002_00672at 736.594 kb on + strand, within MIT1002_00672at 736.602 kb on - strand, within MIT1002_00672at 736.619 kb on + strand, within MIT1002_00672at 736.619 kb on + strand, within MIT1002_00672at 736.619 kb on + strand, within MIT1002_00672at 736.619 kb on + strand, within MIT1002_00672at 736.627 kb on - strand, within MIT1002_00672at 736.627 kb on - strand, within MIT1002_00672at 736.637 kb on - strand, within MIT1002_00672at 736.643 kb on + strand, within MIT1002_00672at 736.668 kb on - strand, within MIT1002_00672at 736.699 kb on - strand, within MIT1002_00672at 736.699 kb on - strand, within MIT1002_00672at 736.730 kb on - strand, within MIT1002_00672at 736.732 kb on - strand, within MIT1002_00672at 736.732 kb on - strand, within MIT1002_00672at 736.852 kb on + strand, within MIT1002_00672at 736.898 kb on + strandat 736.898 kb on + strandat 736.906 kb on - strandat 736.910 kb on + strandat 737.043 kb on + strand, within MIT1002_00673at 737.072 kb on - strand, within MIT1002_00673at 737.086 kb on + strand, within MIT1002_00673at 737.128 kb on - strand, within MIT1002_00673at 737.138 kb on - strand, within MIT1002_00673at 737.283 kb on - strand, within MIT1002_00673at 737.283 kb on - strand, within MIT1002_00673at 737.370 kb on - strand, within MIT1002_00673at 737.384 kb on + strand, within MIT1002_00673at 737.460 kb on + strand, within MIT1002_00673at 737.468 kb on - strand, within MIT1002_00673at 737.527 kb on - strand, within MIT1002_00673at 737.527 kb on - strand, within MIT1002_00673at 737.528 kb on - strand, within MIT1002_00673at 737.643 kb on - strandat 737.726 kb on - strandat 737.738 kb on + strandat 737.796 kb on + strandat 737.818 kb on + strandat 737.869 kb on + strandat 737.912 kb on + strand, within MIT1002_00674at 737.920 kb on - strand, within MIT1002_00674at 737.958 kb on - strand, within MIT1002_00674at 737.968 kb on - strand, within MIT1002_00674at 737.968 kb on - strand, within MIT1002_00674at 738.018 kb on + strand, within MIT1002_00674at 738.023 kb on + strand, within MIT1002_00674at 738.023 kb on + strand, within MIT1002_00674at 738.023 kb on + strand, within MIT1002_00674at 738.126 kb on - strand, within MIT1002_00674at 738.136 kb on + strand, within MIT1002_00674at 738.161 kb on + strand, within MIT1002_00674at 738.161 kb on + strand, within MIT1002_00674at 738.170 kb on - strand, within MIT1002_00674at 738.317 kb on - strand, within MIT1002_00674at 738.345 kb on - strand, within MIT1002_00674at 738.385 kb on - strandat 738.448 kb on + strandat 738.464 kb on + strandat 738.464 kb on + strandat 738.479 kb on + strandat 738.515 kb on + strandat 738.515 kb on + strandat 738.515 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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735,993 - MIT1002_00671 0.21 -0.4
736,020 + MIT1002_00671 0.26 +2.6
736,020 + MIT1002_00671 0.26 -0.3
736,094 - MIT1002_00671 0.37 +0.0
736,139 + MIT1002_00671 0.44 +1.4
736,161 + MIT1002_00671 0.48 -1.4
736,176 + MIT1002_00671 0.50 +0.8
736,177 - MIT1002_00671 0.51 +1.2
736,186 + MIT1002_00671 0.52 +0.0
736,186 - MIT1002_00671 0.52 -0.6
736,198 + MIT1002_00671 0.54 +0.5
736,237 + MIT1002_00671 0.60 -0.3
736,299 - MIT1002_00671 0.70 +0.5
736,321 - MIT1002_00671 0.74 -0.9
736,367 - MIT1002_00671 0.81 +0.1
736,421 - MIT1002_00671 0.89 +1.2
736,469 - -2.8
736,471 + -1.4
736,497 - MIT1002_00672 0.13 -2.2
736,553 + MIT1002_00672 0.24 +0.1
736,556 - MIT1002_00672 0.25 -2.3
736,561 - MIT1002_00672 0.26 -1.0
736,594 + MIT1002_00672 0.33 -0.8
736,602 - MIT1002_00672 0.34 -0.6
736,619 + MIT1002_00672 0.38 -1.3
736,619 + MIT1002_00672 0.38 -3.0
736,619 + MIT1002_00672 0.38 -1.8
736,619 + MIT1002_00672 0.38 -0.8
736,627 - MIT1002_00672 0.39 -2.2
736,627 - MIT1002_00672 0.39 -2.8
736,637 - MIT1002_00672 0.41 -0.8
736,643 + MIT1002_00672 0.43 -0.1
736,668 - MIT1002_00672 0.48 -2.8
736,699 - MIT1002_00672 0.54 -2.1
736,699 - MIT1002_00672 0.54 -0.5
736,730 - MIT1002_00672 0.60 -0.8
736,732 - MIT1002_00672 0.61 -1.0
736,732 - MIT1002_00672 0.61 -0.3
736,852 + MIT1002_00672 0.85 -1.6
736,898 + -1.4
736,898 + -2.2
736,906 - -2.3
736,910 + +0.5
737,043 + MIT1002_00673 0.15 -3.0
737,072 - MIT1002_00673 0.19 -1.4
737,086 + MIT1002_00673 0.21 -1.2
737,128 - MIT1002_00673 0.26 -2.8
737,138 - MIT1002_00673 0.27 -2.0
737,283 - MIT1002_00673 0.45 -1.4
737,283 - MIT1002_00673 0.45 -1.0
737,370 - MIT1002_00673 0.56 +1.2
737,384 + MIT1002_00673 0.58 -0.9
737,460 + MIT1002_00673 0.67 -6.3
737,468 - MIT1002_00673 0.68 -2.2
737,527 - MIT1002_00673 0.75 -1.5
737,527 - MIT1002_00673 0.75 -2.3
737,528 - MIT1002_00673 0.76 -2.2
737,643 - -2.3
737,726 - -0.7
737,738 + -0.6
737,796 + -0.5
737,818 + +2.8
737,869 + -1.0
737,912 + MIT1002_00674 0.10 +1.2
737,920 - MIT1002_00674 0.12 -2.1
737,958 - MIT1002_00674 0.18 -1.7
737,968 - MIT1002_00674 0.20 -0.5
737,968 - MIT1002_00674 0.20 -0.1
738,018 + MIT1002_00674 0.29 -1.3
738,023 + MIT1002_00674 0.30 +2.3
738,023 + MIT1002_00674 0.30 -1.0
738,023 + MIT1002_00674 0.30 +1.9
738,126 - MIT1002_00674 0.47 +0.0
738,136 + MIT1002_00674 0.49 +0.3
738,161 + MIT1002_00674 0.53 -2.1
738,161 + MIT1002_00674 0.53 -1.0
738,170 - MIT1002_00674 0.55 -0.5
738,317 - MIT1002_00674 0.80 -0.7
738,345 - MIT1002_00674 0.85 -0.1
738,385 - -0.0
738,448 + +1.9
738,464 + +1.6
738,464 + +1.0
738,479 + -1.0
738,515 + +0.9
738,515 + +0.0
738,515 + -0.9

Or see this region's nucleotide sequence