Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00620 and MIT1002_00621 are separated by 33 nucleotides MIT1002_00621 and MIT1002_00622 are separated by 13 nucleotides MIT1002_00622 and MIT1002_00623 are separated by 63 nucleotides MIT1002_00623 and MIT1002_00624 are separated by 170 nucleotides MIT1002_00624 and MIT1002_00625 are separated by 113 nucleotides
MIT1002_00620: MIT1002_00620 - nickel-type superoxide dismutase maturation protease, at 671,602 to 671,856
_00620
MIT1002_00621: MIT1002_00621 - Superoxide dismutase [Ni] precursor, at 671,890 to 672,387
_00621
MIT1002_00622: MIT1002_00622 - hypothetical protein, at 672,401 to 672,607
_00622
MIT1002_00623: MIT1002_00623 - hypothetical protein, at 672,671 to 673,036
_00623
MIT1002_00624: MIT1002_00624 - Dihydrofolate reductase type 3, at 673,207 to 673,716
_00624
MIT1002_00625: MIT1002_00625 - RNA polymerase sigma factor RpoS, at 673,830 to 674,822
_00625
Position (kb) 672
673
674 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 671.712 kb on - strand, within MIT1002_00620 at 671.730 kb on + strand, within MIT1002_00620 at 671.738 kb on - strand, within MIT1002_00620 at 671.738 kb on - strand, within MIT1002_00620 at 671.789 kb on + strand, within MIT1002_00620 at 671.789 kb on + strand, within MIT1002_00620 at 671.797 kb on - strand, within MIT1002_00620 at 671.797 kb on - strand, within MIT1002_00620 at 671.807 kb on + strand, within MIT1002_00620 at 671.887 kb on + strand at 671.896 kb on - strand at 671.908 kb on - strand at 671.908 kb on - strand at 671.930 kb on - strand at 671.964 kb on - strand, within MIT1002_00621 at 671.986 kb on + strand, within MIT1002_00621 at 672.119 kb on - strand, within MIT1002_00621 at 672.129 kb on + strand, within MIT1002_00621 at 672.137 kb on - strand, within MIT1002_00621 at 672.137 kb on - strand, within MIT1002_00621 at 672.190 kb on + strand, within MIT1002_00621 at 672.269 kb on - strand, within MIT1002_00621 at 672.343 kb on + strand at 672.344 kb on - strand at 672.344 kb on - strand at 672.347 kb on + strand at 672.348 kb on + strand at 672.467 kb on + strand, within MIT1002_00622 at 672.467 kb on + strand, within MIT1002_00622 at 672.475 kb on - strand, within MIT1002_00622 at 672.475 kb on - strand, within MIT1002_00622 at 672.475 kb on - strand, within MIT1002_00622 at 672.504 kb on - strand, within MIT1002_00622 at 672.504 kb on - strand, within MIT1002_00622 at 672.515 kb on + strand, within MIT1002_00622 at 672.517 kb on + strand, within MIT1002_00622 at 672.517 kb on - strand, within MIT1002_00622 at 672.525 kb on - strand, within MIT1002_00622 at 672.557 kb on + strand, within MIT1002_00622 at 672.562 kb on - strand, within MIT1002_00622 at 672.562 kb on - strand, within MIT1002_00622 at 672.574 kb on + strand, within MIT1002_00622 at 672.575 kb on + strand, within MIT1002_00622 at 672.575 kb on + strand, within MIT1002_00622 at 672.575 kb on + strand, within MIT1002_00622 at 672.583 kb on - strand, within MIT1002_00622 at 672.583 kb on - strand, within MIT1002_00622 at 672.673 kb on + strand at 672.673 kb on - strand at 672.678 kb on + strand at 672.691 kb on + strand at 672.691 kb on + strand at 672.691 kb on + strand at 672.696 kb on - strand at 672.728 kb on - strand, within MIT1002_00623 at 672.730 kb on - strand, within MIT1002_00623 at 672.839 kb on + strand, within MIT1002_00623 at 672.839 kb on + strand, within MIT1002_00623 at 672.839 kb on + strand, within MIT1002_00623 at 672.839 kb on + strand, within MIT1002_00623 at 672.847 kb on - strand, within MIT1002_00623 at 672.847 kb on - strand, within MIT1002_00623 at 672.847 kb on - strand, within MIT1002_00623 at 672.847 kb on - strand, within MIT1002_00623 at 672.904 kb on - strand, within MIT1002_00623 at 672.917 kb on - strand, within MIT1002_00623 at 672.917 kb on - strand, within MIT1002_00623 at 672.934 kb on + strand, within MIT1002_00623 at 672.934 kb on + strand, within MIT1002_00623 at 672.979 kb on + strand, within MIT1002_00623 at 672.979 kb on + strand, within MIT1002_00623 at 672.979 kb on + strand, within MIT1002_00623 at 672.979 kb on + strand, within MIT1002_00623 at 672.979 kb on + strand, within MIT1002_00623 at 672.987 kb on - strand, within MIT1002_00623 at 672.987 kb on - strand, within MIT1002_00623 at 672.997 kb on - strand, within MIT1002_00623 at 672.997 kb on - strand, within MIT1002_00623 at 673.048 kb on + strand at 673.056 kb on - strand at 673.056 kb on - strand at 673.059 kb on - strand at 673.061 kb on - strand at 673.068 kb on - strand at 673.118 kb on + strand at 673.118 kb on + strand at 673.126 kb on - strand at 673.126 kb on - strand at 673.141 kb on + strand at 673.190 kb on + strand at 673.723 kb on + strand at 673.787 kb on + strand at 673.787 kb on + strand at 673.976 kb on + strand, within MIT1002_00625 at 673.977 kb on - strand, within MIT1002_00625 at 673.985 kb on + strand, within MIT1002_00625 at 673.999 kb on - strand, within MIT1002_00625 at 674.021 kb on + strand, within MIT1002_00625 at 674.034 kb on - strand, within MIT1002_00625
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 671,712 - MIT1002_00620 0.43 +1.1 671,730 + MIT1002_00620 0.50 -0.1 671,738 - MIT1002_00620 0.53 +0.2 671,738 - MIT1002_00620 0.53 -1.0 671,789 + MIT1002_00620 0.73 -1.0 671,789 + MIT1002_00620 0.73 +1.5 671,797 - MIT1002_00620 0.76 +0.3 671,797 - MIT1002_00620 0.76 +2.1 671,807 + MIT1002_00620 0.80 -1.3 671,887 + +1.1 671,896 - -0.6 671,908 - +0.2 671,908 - +0.0 671,930 - +0.2 671,964 - MIT1002_00621 0.15 -0.1 671,986 + MIT1002_00621 0.19 +1.3 672,119 - MIT1002_00621 0.46 +1.3 672,129 + MIT1002_00621 0.48 -0.4 672,137 - MIT1002_00621 0.50 +0.3 672,137 - MIT1002_00621 0.50 -0.4 672,190 + MIT1002_00621 0.60 -0.8 672,269 - MIT1002_00621 0.76 +1.3 672,343 + +0.5 672,344 - -0.2 672,344 - +0.1 672,347 + +0.1 672,348 + -0.2 672,467 + MIT1002_00622 0.32 -1.3 672,467 + MIT1002_00622 0.32 +1.9 672,475 - MIT1002_00622 0.36 +0.7 672,475 - MIT1002_00622 0.36 +3.9 672,475 - MIT1002_00622 0.36 +0.9 672,504 - MIT1002_00622 0.50 -1.0 672,504 - MIT1002_00622 0.50 +0.6 672,515 + MIT1002_00622 0.55 +0.5 672,517 + MIT1002_00622 0.56 -0.9 672,517 - MIT1002_00622 0.56 +2.8 672,525 - MIT1002_00622 0.60 +1.7 672,557 + MIT1002_00622 0.75 +0.0 672,562 - MIT1002_00622 0.78 +1.0 672,562 - MIT1002_00622 0.78 +0.7 672,574 + MIT1002_00622 0.84 +1.0 672,575 + MIT1002_00622 0.84 +2.3 672,575 + MIT1002_00622 0.84 +0.6 672,575 + MIT1002_00622 0.84 +0.7 672,583 - MIT1002_00622 0.88 +1.5 672,583 - MIT1002_00622 0.88 +0.4 672,673 + -1.3 672,673 - +1.2 672,678 + +1.7 672,691 + -0.3 672,691 + +3.5 672,691 + +0.5 672,696 - +1.1 672,728 - MIT1002_00623 0.16 +0.4 672,730 - MIT1002_00623 0.16 -0.1 672,839 + MIT1002_00623 0.46 +0.4 672,839 + MIT1002_00623 0.46 -0.8 672,839 + MIT1002_00623 0.46 -0.1 672,839 + MIT1002_00623 0.46 -0.5 672,847 - MIT1002_00623 0.48 +1.3 672,847 - MIT1002_00623 0.48 +0.7 672,847 - MIT1002_00623 0.48 +0.4 672,847 - MIT1002_00623 0.48 -1.1 672,904 - MIT1002_00623 0.64 +0.6 672,917 - MIT1002_00623 0.67 +0.7 672,917 - MIT1002_00623 0.67 +2.0 672,934 + MIT1002_00623 0.72 -0.7 672,934 + MIT1002_00623 0.72 +1.2 672,979 + MIT1002_00623 0.84 -0.6 672,979 + MIT1002_00623 0.84 +0.5 672,979 + MIT1002_00623 0.84 +0.9 672,979 + MIT1002_00623 0.84 -1.2 672,979 + MIT1002_00623 0.84 +0.1 672,987 - MIT1002_00623 0.86 -2.1 672,987 - MIT1002_00623 0.86 -1.7 672,997 - MIT1002_00623 0.89 +0.5 672,997 - MIT1002_00623 0.89 +1.5 673,048 + +1.3 673,056 - +1.2 673,056 - -1.4 673,059 - +1.1 673,061 - +2.1 673,068 - +1.5 673,118 + -0.7 673,118 + +0.2 673,126 - +0.2 673,126 - +1.5 673,141 + -1.8 673,190 + -1.1 673,723 + -0.8 673,787 + -0.8 673,787 + +0.5 673,976 + MIT1002_00625 0.15 -0.6 673,977 - MIT1002_00625 0.15 -4.1 673,985 + MIT1002_00625 0.16 -0.9 673,999 - MIT1002_00625 0.17 -2.0 674,021 + MIT1002_00625 0.19 -0.7 674,034 - MIT1002_00625 0.21 -1.8
Or see this region's nucleotide sequence