Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00522 and MIT1002_00523 are separated by 60 nucleotides MIT1002_00523 and MIT1002_00524 are separated by 66 nucleotides MIT1002_00524 and MIT1002_00525 are separated by 186 nucleotides MIT1002_00525 and MIT1002_00526 are separated by 194 nucleotides
MIT1002_00522: MIT1002_00522 - N5-carboxyaminoimidazole ribonucleotide synthase, at 568,772 to 569,908
_00522
MIT1002_00523: MIT1002_00523 - tRNA-Thr, at 569,969 to 570,044
_00523
MIT1002_00524: MIT1002_00524 - hypothetical protein, at 570,111 to 570,656
_00524
MIT1002_00525: MIT1002_00525 - DNA protection during starvation protein 2, at 570,843 to 571,316
_00525
MIT1002_00526: MIT1002_00526 - Soluble aldose sugar dehydrogenase YliI precursor, at 571,511 to 572,692
_00526
Position (kb) 570
571 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 569.157 kb on + strand, within MIT1002_00522 at 569.332 kb on + strand, within MIT1002_00522 at 569.364 kb on - strand, within MIT1002_00522 at 569.366 kb on - strand, within MIT1002_00522 at 569.366 kb on - strand, within MIT1002_00522 at 569.398 kb on - strand, within MIT1002_00522 at 569.449 kb on + strand, within MIT1002_00522 at 569.479 kb on + strand, within MIT1002_00522 at 569.480 kb on + strand, within MIT1002_00522 at 569.488 kb on - strand, within MIT1002_00522 at 569.515 kb on + strand, within MIT1002_00522 at 569.523 kb on - strand, within MIT1002_00522 at 569.576 kb on - strand, within MIT1002_00522 at 569.724 kb on + strand, within MIT1002_00522 at 569.732 kb on - strand, within MIT1002_00522 at 569.738 kb on + strand, within MIT1002_00522 at 569.738 kb on + strand, within MIT1002_00522 at 569.858 kb on + strand at 569.866 kb on - strand at 570.089 kb on - strand at 570.178 kb on - strand, within MIT1002_00524 at 570.279 kb on + strand, within MIT1002_00524 at 570.279 kb on + strand, within MIT1002_00524 at 570.293 kb on + strand, within MIT1002_00524 at 570.294 kb on + strand, within MIT1002_00524 at 570.323 kb on + strand, within MIT1002_00524 at 570.333 kb on - strand, within MIT1002_00524 at 570.338 kb on + strand, within MIT1002_00524 at 570.363 kb on - strand, within MIT1002_00524 at 570.493 kb on + strand, within MIT1002_00524 at 570.536 kb on - strand, within MIT1002_00524 at 570.549 kb on - strand, within MIT1002_00524 at 570.564 kb on + strand, within MIT1002_00524 at 570.589 kb on + strand, within MIT1002_00524 at 570.604 kb on - strand at 570.719 kb on + strand at 570.826 kb on + strand at 570.828 kb on + strand at 570.834 kb on + strand at 570.842 kb on - strand at 571.007 kb on + strand, within MIT1002_00525 at 571.007 kb on + strand, within MIT1002_00525 at 571.007 kb on + strand, within MIT1002_00525 at 571.007 kb on + strand, within MIT1002_00525 at 571.012 kb on + strand, within MIT1002_00525 at 571.012 kb on + strand, within MIT1002_00525 at 571.015 kb on - strand, within MIT1002_00525 at 571.015 kb on - strand, within MIT1002_00525 at 571.015 kb on - strand, within MIT1002_00525 at 571.074 kb on + strand, within MIT1002_00525 at 571.084 kb on + strand, within MIT1002_00525 at 571.092 kb on - strand, within MIT1002_00525 at 571.092 kb on - strand, within MIT1002_00525 at 571.121 kb on + strand, within MIT1002_00525 at 571.130 kb on - strand, within MIT1002_00525 at 571.205 kb on + strand, within MIT1002_00525 at 571.213 kb on - strand, within MIT1002_00525 at 571.215 kb on + strand, within MIT1002_00525 at 571.235 kb on + strand, within MIT1002_00525 at 571.241 kb on - strand, within MIT1002_00525 at 571.305 kb on - strand at 571.308 kb on - strand at 571.371 kb on + strand at 571.379 kb on - strand at 571.379 kb on - strand at 571.405 kb on + strand at 571.405 kb on + strand at 571.405 kb on + strand at 571.405 kb on + strand at 571.405 kb on + strand at 571.405 kb on + strand at 571.413 kb on - strand at 571.413 kb on - strand at 571.413 kb on - strand at 571.413 kb on - strand at 571.413 kb on - strand at 571.413 kb on - strand at 571.418 kb on - strand at 571.432 kb on + strand at 571.467 kb on - strand at 571.548 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 569,157 + MIT1002_00522 0.34 -2.3 569,332 + MIT1002_00522 0.49 -3.8 569,364 - MIT1002_00522 0.52 +1.2 569,366 - MIT1002_00522 0.52 +0.2 569,366 - MIT1002_00522 0.52 -1.3 569,398 - MIT1002_00522 0.55 -2.7 569,449 + MIT1002_00522 0.60 -2.9 569,479 + MIT1002_00522 0.62 -1.0 569,480 + MIT1002_00522 0.62 -0.6 569,488 - MIT1002_00522 0.63 -2.1 569,515 + MIT1002_00522 0.65 -4.7 569,523 - MIT1002_00522 0.66 -2.3 569,576 - MIT1002_00522 0.71 -1.8 569,724 + MIT1002_00522 0.84 +0.1 569,732 - MIT1002_00522 0.84 +0.9 569,738 + MIT1002_00522 0.85 -3.5 569,738 + MIT1002_00522 0.85 -5.0 569,858 + -5.4 569,866 - -0.4 570,089 - -1.7 570,178 - MIT1002_00524 0.12 -1.6 570,279 + MIT1002_00524 0.31 -0.5 570,279 + MIT1002_00524 0.31 -1.5 570,293 + MIT1002_00524 0.33 -0.7 570,294 + MIT1002_00524 0.34 +0.1 570,323 + MIT1002_00524 0.39 +1.5 570,333 - MIT1002_00524 0.41 -0.5 570,338 + MIT1002_00524 0.42 -1.1 570,363 - MIT1002_00524 0.46 +0.2 570,493 + MIT1002_00524 0.70 +0.7 570,536 - MIT1002_00524 0.78 -3.0 570,549 - MIT1002_00524 0.80 -0.7 570,564 + MIT1002_00524 0.83 -0.8 570,589 + MIT1002_00524 0.88 +1.0 570,604 - -1.2 570,719 + +1.0 570,826 + +2.1 570,828 + +0.2 570,834 + -1.9 570,842 - +2.5 571,007 + MIT1002_00525 0.35 -0.1 571,007 + MIT1002_00525 0.35 +1.0 571,007 + MIT1002_00525 0.35 +0.7 571,007 + MIT1002_00525 0.35 +0.1 571,012 + MIT1002_00525 0.36 +0.4 571,012 + MIT1002_00525 0.36 +0.2 571,015 - MIT1002_00525 0.36 -1.5 571,015 - MIT1002_00525 0.36 +0.7 571,015 - MIT1002_00525 0.36 -1.3 571,074 + MIT1002_00525 0.49 -2.6 571,084 + MIT1002_00525 0.51 -2.2 571,092 - MIT1002_00525 0.53 +0.2 571,092 - MIT1002_00525 0.53 -0.6 571,121 + MIT1002_00525 0.59 -1.5 571,130 - MIT1002_00525 0.61 -0.3 571,205 + MIT1002_00525 0.76 +1.8 571,213 - MIT1002_00525 0.78 +0.9 571,215 + MIT1002_00525 0.78 +0.5 571,235 + MIT1002_00525 0.83 -1.6 571,241 - MIT1002_00525 0.84 +0.7 571,305 - -0.6 571,308 - +0.2 571,371 + +2.5 571,379 - +0.0 571,379 - +1.1 571,405 + -0.3 571,405 + -3.0 571,405 + +0.7 571,405 + +0.4 571,405 + +0.0 571,405 + +1.0 571,413 - -1.0 571,413 - -0.5 571,413 - +2.1 571,413 - -0.6 571,413 - -0.2 571,413 - +0.0 571,418 - -0.3 571,432 + +0.1 571,467 - +0.8 571,548 - -0.2
Or see this region's nucleotide sequence