Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00518 and MIT1002_00519 are separated by 22 nucleotides MIT1002_00519 and MIT1002_00520 overlap by 39 nucleotides
MIT1002_00518: MIT1002_00518 - putative hydrolase YxeP, at 562,629 to 563,927
_00518
MIT1002_00519: MIT1002_00519 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 563,950 to 566,766
_00519
MIT1002_00520: MIT1002_00520 - Sodium/proton antiporter NhaA, at 566,728 to 568,002
_00520
Position (kb) 563
564
565
566
567 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 562.991 kb on - strand, within MIT1002_00518 at 563.013 kb on + strand, within MIT1002_00518 at 563.018 kb on + strand, within MIT1002_00518 at 563.025 kb on + strand, within MIT1002_00518 at 563.078 kb on + strand, within MIT1002_00518 at 563.122 kb on + strand, within MIT1002_00518 at 563.124 kb on + strand, within MIT1002_00518 at 563.132 kb on - strand, within MIT1002_00518 at 563.316 kb on + strand, within MIT1002_00518 at 563.337 kb on - strand, within MIT1002_00518 at 563.347 kb on + strand, within MIT1002_00518 at 563.388 kb on + strand, within MIT1002_00518 at 563.396 kb on - strand, within MIT1002_00518 at 563.397 kb on + strand, within MIT1002_00518 at 563.462 kb on - strand, within MIT1002_00518 at 563.522 kb on + strand, within MIT1002_00518 at 563.522 kb on + strand, within MIT1002_00518 at 563.530 kb on - strand, within MIT1002_00518 at 563.530 kb on - strand, within MIT1002_00518 at 563.560 kb on - strand, within MIT1002_00518 at 563.623 kb on - strand, within MIT1002_00518 at 563.650 kb on + strand, within MIT1002_00518 at 563.658 kb on - strand, within MIT1002_00518 at 563.658 kb on - strand, within MIT1002_00518 at 563.677 kb on + strand, within MIT1002_00518 at 563.685 kb on - strand, within MIT1002_00518 at 563.687 kb on - strand, within MIT1002_00518 at 563.734 kb on - strand, within MIT1002_00518 at 563.792 kb on + strand, within MIT1002_00518 at 563.807 kb on - strand at 563.819 kb on + strand at 563.819 kb on + strand at 563.827 kb on - strand at 563.829 kb on + strand at 563.865 kb on + strand at 563.910 kb on - strand at 563.924 kb on - strand at 563.924 kb on - strand at 564.006 kb on + strand at 564.006 kb on + strand at 564.014 kb on - strand at 564.014 kb on - strand at 564.049 kb on + strand at 564.050 kb on - strand at 564.086 kb on + strand at 564.094 kb on + strand at 564.165 kb on + strand at 564.166 kb on - strand at 564.190 kb on + strand at 564.200 kb on + strand at 564.205 kb on - strand at 564.205 kb on - strand at 564.281 kb on + strand, within MIT1002_00519 at 564.289 kb on - strand, within MIT1002_00519 at 564.432 kb on - strand, within MIT1002_00519 at 564.439 kb on - strand, within MIT1002_00519 at 564.439 kb on - strand, within MIT1002_00519 at 564.464 kb on + strand, within MIT1002_00519 at 564.607 kb on - strand, within MIT1002_00519 at 564.615 kb on + strand, within MIT1002_00519 at 564.667 kb on + strand, within MIT1002_00519 at 564.667 kb on + strand, within MIT1002_00519 at 564.673 kb on + strand, within MIT1002_00519 at 564.686 kb on - strand, within MIT1002_00519 at 564.809 kb on + strand, within MIT1002_00519 at 564.916 kb on + strand, within MIT1002_00519 at 564.954 kb on - strand, within MIT1002_00519 at 564.995 kb on + strand, within MIT1002_00519 at 564.995 kb on + strand, within MIT1002_00519 at 564.995 kb on + strand, within MIT1002_00519 at 564.995 kb on + strand, within MIT1002_00519 at 565.000 kb on + strand, within MIT1002_00519 at 565.003 kb on - strand, within MIT1002_00519 at 565.003 kb on - strand, within MIT1002_00519 at 565.013 kb on - strand, within MIT1002_00519 at 565.036 kb on + strand, within MIT1002_00519 at 565.093 kb on + strand, within MIT1002_00519 at 565.111 kb on - strand, within MIT1002_00519 at 565.131 kb on + strand, within MIT1002_00519 at 565.214 kb on - strand, within MIT1002_00519 at 565.306 kb on + strand, within MIT1002_00519 at 565.411 kb on + strand, within MIT1002_00519 at 565.445 kb on - strand, within MIT1002_00519 at 565.447 kb on + strand, within MIT1002_00519 at 565.566 kb on - strand, within MIT1002_00519 at 565.624 kb on + strand, within MIT1002_00519 at 565.717 kb on + strand, within MIT1002_00519 at 565.730 kb on + strand, within MIT1002_00519 at 565.880 kb on + strand, within MIT1002_00519 at 565.935 kb on + strand, within MIT1002_00519 at 565.943 kb on - strand, within MIT1002_00519 at 565.957 kb on + strand, within MIT1002_00519 at 565.964 kb on + strand, within MIT1002_00519 at 565.976 kb on + strand, within MIT1002_00519 at 566.006 kb on + strand, within MIT1002_00519 at 566.023 kb on - strand, within MIT1002_00519 at 566.071 kb on + strand, within MIT1002_00519 at 566.101 kb on - strand, within MIT1002_00519 at 566.102 kb on - strand, within MIT1002_00519 at 566.160 kb on - strand, within MIT1002_00519 at 566.230 kb on + strand, within MIT1002_00519 at 566.230 kb on + strand, within MIT1002_00519 at 566.230 kb on + strand, within MIT1002_00519 at 566.238 kb on - strand, within MIT1002_00519 at 566.238 kb on - strand, within MIT1002_00519 at 566.243 kb on - strand, within MIT1002_00519 at 566.301 kb on + strand, within MIT1002_00519 at 566.309 kb on - strand, within MIT1002_00519 at 566.390 kb on - strand, within MIT1002_00519 at 566.512 kb on + strand at 566.573 kb on + strand at 566.581 kb on - strand at 566.629 kb on - strand at 566.686 kb on + strand at 566.785 kb on - strand at 566.814 kb on + strand at 566.815 kb on + strand at 566.911 kb on - strand, within MIT1002_00520 at 566.950 kb on - strand, within MIT1002_00520 at 566.959 kb on + strand, within MIT1002_00520 at 566.967 kb on - strand, within MIT1002_00520 at 567.003 kb on + strand, within MIT1002_00520 at 567.023 kb on - strand, within MIT1002_00520 at 567.093 kb on + strand, within MIT1002_00520 at 567.115 kb on - strand, within MIT1002_00520 at 567.115 kb on - strand, within MIT1002_00520 at 567.258 kb on + strand, within MIT1002_00520 at 567.258 kb on + strand, within MIT1002_00520 at 567.266 kb on - strand, within MIT1002_00520 at 567.276 kb on - strand, within MIT1002_00520 at 567.398 kb on + strand, within MIT1002_00520 at 567.403 kb on - strand, within MIT1002_00520 at 567.403 kb on - strand, within MIT1002_00520 at 567.403 kb on - strand, within MIT1002_00520 at 567.405 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.528 kb on - strand, within MIT1002_00520 at 567.604 kb on - strand, within MIT1002_00520 at 567.644 kb on - strand, within MIT1002_00520 at 567.653 kb on - strand, within MIT1002_00520 at 567.721 kb on + strand, within MIT1002_00520 at 567.726 kb on + strand, within MIT1002_00520 at 567.750 kb on + strand, within MIT1002_00520 at 567.758 kb on - strand, within MIT1002_00520 at 567.762 kb on + strand, within MIT1002_00520
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 562,991 - MIT1002_00518 0.28 +1.5 563,013 + MIT1002_00518 0.30 -0.1 563,018 + MIT1002_00518 0.30 +1.0 563,025 + MIT1002_00518 0.30 +0.4 563,078 + MIT1002_00518 0.35 +0.2 563,122 + MIT1002_00518 0.38 -0.5 563,124 + MIT1002_00518 0.38 -0.9 563,132 - MIT1002_00518 0.39 -1.4 563,316 + MIT1002_00518 0.53 +1.0 563,337 - MIT1002_00518 0.55 -0.2 563,347 + MIT1002_00518 0.55 +1.0 563,388 + MIT1002_00518 0.58 +1.5 563,396 - MIT1002_00518 0.59 +1.0 563,397 + MIT1002_00518 0.59 -0.2 563,462 - MIT1002_00518 0.64 +0.2 563,522 + MIT1002_00518 0.69 +2.0 563,522 + MIT1002_00518 0.69 -0.3 563,530 - MIT1002_00518 0.69 +0.4 563,530 - MIT1002_00518 0.69 -0.6 563,560 - MIT1002_00518 0.72 +0.4 563,623 - MIT1002_00518 0.77 +0.7 563,650 + MIT1002_00518 0.79 -0.0 563,658 - MIT1002_00518 0.79 +1.4 563,658 - MIT1002_00518 0.79 +1.8 563,677 + MIT1002_00518 0.81 +1.3 563,685 - MIT1002_00518 0.81 -1.3 563,687 - MIT1002_00518 0.81 +2.5 563,734 - MIT1002_00518 0.85 -0.4 563,792 + MIT1002_00518 0.90 +0.2 563,807 - -0.0 563,819 + -0.1 563,819 + +2.1 563,827 - -0.8 563,829 + -1.2 563,865 + -1.8 563,910 - +0.4 563,924 - -0.6 563,924 - -0.8 564,006 + +2.7 564,006 + -1.1 564,014 - -0.2 564,014 - -0.2 564,049 + +0.2 564,050 - -0.1 564,086 + +1.0 564,094 + +0.8 564,165 + +1.0 564,166 - -0.8 564,190 + +1.4 564,200 + -3.2 564,205 - +0.8 564,205 - +1.7 564,281 + MIT1002_00519 0.12 -0.3 564,289 - MIT1002_00519 0.12 +0.9 564,432 - MIT1002_00519 0.17 -0.3 564,439 - MIT1002_00519 0.17 +1.6 564,439 - MIT1002_00519 0.17 -0.6 564,464 + MIT1002_00519 0.18 +1.8 564,607 - MIT1002_00519 0.23 +2.2 564,615 + MIT1002_00519 0.24 -0.2 564,667 + MIT1002_00519 0.25 -1.6 564,667 + MIT1002_00519 0.25 -0.6 564,673 + MIT1002_00519 0.26 +1.2 564,686 - MIT1002_00519 0.26 +1.4 564,809 + MIT1002_00519 0.30 -0.3 564,916 + MIT1002_00519 0.34 +1.5 564,954 - MIT1002_00519 0.36 +0.6 564,995 + MIT1002_00519 0.37 -0.2 564,995 + MIT1002_00519 0.37 +0.6 564,995 + MIT1002_00519 0.37 -0.2 564,995 + MIT1002_00519 0.37 -2.3 565,000 + MIT1002_00519 0.37 -0.2 565,003 - MIT1002_00519 0.37 -1.9 565,003 - MIT1002_00519 0.37 +0.3 565,013 - MIT1002_00519 0.38 -1.0 565,036 + MIT1002_00519 0.39 +0.9 565,093 + MIT1002_00519 0.41 +1.6 565,111 - MIT1002_00519 0.41 -0.9 565,131 + MIT1002_00519 0.42 -0.7 565,214 - MIT1002_00519 0.45 +1.8 565,306 + MIT1002_00519 0.48 +0.8 565,411 + MIT1002_00519 0.52 -1.0 565,445 - MIT1002_00519 0.53 +0.5 565,447 + MIT1002_00519 0.53 +2.0 565,566 - MIT1002_00519 0.57 -0.5 565,624 + MIT1002_00519 0.59 -0.3 565,717 + MIT1002_00519 0.63 +0.5 565,730 + MIT1002_00519 0.63 +0.1 565,880 + MIT1002_00519 0.69 -0.3 565,935 + MIT1002_00519 0.70 -0.5 565,943 - MIT1002_00519 0.71 +1.0 565,957 + MIT1002_00519 0.71 +1.0 565,964 + MIT1002_00519 0.71 -1.2 565,976 + MIT1002_00519 0.72 +1.3 566,006 + MIT1002_00519 0.73 +0.7 566,023 - MIT1002_00519 0.74 +0.6 566,071 + MIT1002_00519 0.75 -1.5 566,101 - MIT1002_00519 0.76 -1.3 566,102 - MIT1002_00519 0.76 -1.3 566,160 - MIT1002_00519 0.78 -0.7 566,230 + MIT1002_00519 0.81 -0.1 566,230 + MIT1002_00519 0.81 +0.0 566,230 + MIT1002_00519 0.81 +1.5 566,238 - MIT1002_00519 0.81 +1.0 566,238 - MIT1002_00519 0.81 -1.8 566,243 - MIT1002_00519 0.81 -0.2 566,301 + MIT1002_00519 0.83 -1.6 566,309 - MIT1002_00519 0.84 -0.8 566,390 - MIT1002_00519 0.87 +0.4 566,512 + +0.9 566,573 + -2.0 566,581 - +1.7 566,629 - -0.7 566,686 + +0.4 566,785 - +0.3 566,814 + +1.4 566,815 + +1.3 566,911 - MIT1002_00520 0.14 +0.7 566,950 - MIT1002_00520 0.17 +1.2 566,959 + MIT1002_00520 0.18 +0.9 566,967 - MIT1002_00520 0.19 -0.9 567,003 + MIT1002_00520 0.22 +0.1 567,023 - MIT1002_00520 0.23 +2.5 567,093 + MIT1002_00520 0.29 +1.0 567,115 - MIT1002_00520 0.30 +0.1 567,115 - MIT1002_00520 0.30 -0.4 567,258 + MIT1002_00520 0.42 +0.1 567,258 + MIT1002_00520 0.42 +1.0 567,266 - MIT1002_00520 0.42 +1.1 567,276 - MIT1002_00520 0.43 -0.9 567,398 + MIT1002_00520 0.53 +0.1 567,403 - MIT1002_00520 0.53 -0.5 567,403 - MIT1002_00520 0.53 +0.2 567,403 - MIT1002_00520 0.53 +0.7 567,405 + MIT1002_00520 0.53 -0.5 567,428 + MIT1002_00520 0.55 -0.7 567,428 + MIT1002_00520 0.55 +0.7 567,428 + MIT1002_00520 0.55 +0.1 567,428 + MIT1002_00520 0.55 +0.4 567,428 + MIT1002_00520 0.55 -0.0 567,428 + MIT1002_00520 0.55 -1.0 567,428 + MIT1002_00520 0.55 +0.3 567,428 + MIT1002_00520 0.55 +1.6 567,428 + MIT1002_00520 0.55 -0.8 567,436 - MIT1002_00520 0.56 -1.4 567,436 - MIT1002_00520 0.56 -1.4 567,436 - MIT1002_00520 0.56 +0.2 567,436 - MIT1002_00520 0.56 +0.3 567,436 - MIT1002_00520 0.56 -0.8 567,436 - MIT1002_00520 0.56 +0.7 567,436 - MIT1002_00520 0.56 -0.9 567,436 - MIT1002_00520 0.56 -0.0 567,528 - MIT1002_00520 0.63 -0.0 567,604 - MIT1002_00520 0.69 +1.1 567,644 - MIT1002_00520 0.72 -0.4 567,653 - MIT1002_00520 0.73 -0.4 567,721 + MIT1002_00520 0.78 +0.0 567,726 + MIT1002_00520 0.78 +0.4 567,750 + MIT1002_00520 0.80 -0.5 567,758 - MIT1002_00520 0.81 +0.5 567,762 + MIT1002_00520 0.81 -0.7
Or see this region's nucleotide sequence