Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00518

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00517 and MIT1002_00518 are separated by 229 nucleotidesMIT1002_00518 and MIT1002_00519 are separated by 22 nucleotides MIT1002_00517: MIT1002_00517 - hypothetical protein, at 561,134 to 562,399 _00517 MIT1002_00518: MIT1002_00518 - putative hydrolase YxeP, at 562,629 to 563,927 _00518 MIT1002_00519: MIT1002_00519 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 563,950 to 566,766 _00519 Position (kb) 562 563 564Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 562.374 kb on + strandat 562.579 kb on + strandat 562.597 kb on - strandat 562.597 kb on - strandat 562.662 kb on + strandat 562.662 kb on + strandat 562.662 kb on + strandat 562.697 kb on + strandat 562.705 kb on - strandat 562.705 kb on - strandat 562.724 kb on + strandat 562.742 kb on - strandat 562.805 kb on + strand, within MIT1002_00518at 562.878 kb on + strand, within MIT1002_00518at 562.895 kb on + strand, within MIT1002_00518at 562.897 kb on - strand, within MIT1002_00518at 562.947 kb on - strand, within MIT1002_00518at 562.991 kb on - strand, within MIT1002_00518at 563.013 kb on + strand, within MIT1002_00518at 563.018 kb on + strand, within MIT1002_00518at 563.025 kb on + strand, within MIT1002_00518at 563.078 kb on + strand, within MIT1002_00518at 563.122 kb on + strand, within MIT1002_00518at 563.124 kb on + strand, within MIT1002_00518at 563.132 kb on - strand, within MIT1002_00518at 563.316 kb on + strand, within MIT1002_00518at 563.337 kb on - strand, within MIT1002_00518at 563.347 kb on + strand, within MIT1002_00518at 563.388 kb on + strand, within MIT1002_00518at 563.396 kb on - strand, within MIT1002_00518at 563.397 kb on + strand, within MIT1002_00518at 563.462 kb on - strand, within MIT1002_00518at 563.522 kb on + strand, within MIT1002_00518at 563.522 kb on + strand, within MIT1002_00518at 563.530 kb on - strand, within MIT1002_00518at 563.530 kb on - strand, within MIT1002_00518at 563.560 kb on - strand, within MIT1002_00518at 563.623 kb on - strand, within MIT1002_00518at 563.650 kb on + strand, within MIT1002_00518at 563.658 kb on - strand, within MIT1002_00518at 563.658 kb on - strand, within MIT1002_00518at 563.677 kb on + strand, within MIT1002_00518at 563.685 kb on - strand, within MIT1002_00518at 563.687 kb on - strand, within MIT1002_00518at 563.734 kb on - strand, within MIT1002_00518at 563.792 kb on + strand, within MIT1002_00518at 563.807 kb on - strandat 563.819 kb on + strandat 563.819 kb on + strandat 563.827 kb on - strandat 563.829 kb on + strandat 563.865 kb on + strandat 563.910 kb on - strandat 563.924 kb on - strandat 563.924 kb on - strandat 564.006 kb on + strandat 564.006 kb on + strandat 564.014 kb on - strandat 564.014 kb on - strandat 564.049 kb on + strandat 564.050 kb on - strandat 564.086 kb on + strandat 564.094 kb on + strandat 564.165 kb on + strandat 564.166 kb on - strandat 564.190 kb on + strandat 564.200 kb on + strandat 564.205 kb on - strandat 564.205 kb on - strandat 564.281 kb on + strand, within MIT1002_00519at 564.289 kb on - strand, within MIT1002_00519at 564.432 kb on - strand, within MIT1002_00519at 564.439 kb on - strand, within MIT1002_00519at 564.439 kb on - strand, within MIT1002_00519at 564.464 kb on + strand, within MIT1002_00519at 564.607 kb on - strand, within MIT1002_00519at 564.615 kb on + strand, within MIT1002_00519at 564.667 kb on + strand, within MIT1002_00519at 564.667 kb on + strand, within MIT1002_00519at 564.673 kb on + strand, within MIT1002_00519at 564.686 kb on - strand, within MIT1002_00519at 564.809 kb on + strand, within MIT1002_00519at 564.916 kb on + strand, within MIT1002_00519

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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562,374 + +0.4
562,579 + -0.6
562,597 - -0.4
562,597 - -1.1
562,662 + +1.2
562,662 + -0.5
562,662 + +1.2
562,697 + -0.5
562,705 - +0.4
562,705 - +1.5
562,724 + +0.4
562,742 - +0.2
562,805 + MIT1002_00518 0.14 +0.7
562,878 + MIT1002_00518 0.19 -0.4
562,895 + MIT1002_00518 0.20 +0.0
562,897 - MIT1002_00518 0.21 +0.5
562,947 - MIT1002_00518 0.24 -0.0
562,991 - MIT1002_00518 0.28 +1.5
563,013 + MIT1002_00518 0.30 -0.1
563,018 + MIT1002_00518 0.30 +1.0
563,025 + MIT1002_00518 0.30 +0.4
563,078 + MIT1002_00518 0.35 +0.2
563,122 + MIT1002_00518 0.38 -0.5
563,124 + MIT1002_00518 0.38 -0.9
563,132 - MIT1002_00518 0.39 -1.4
563,316 + MIT1002_00518 0.53 +1.0
563,337 - MIT1002_00518 0.55 -0.2
563,347 + MIT1002_00518 0.55 +1.0
563,388 + MIT1002_00518 0.58 +1.5
563,396 - MIT1002_00518 0.59 +1.0
563,397 + MIT1002_00518 0.59 -0.2
563,462 - MIT1002_00518 0.64 +0.2
563,522 + MIT1002_00518 0.69 +2.0
563,522 + MIT1002_00518 0.69 -0.3
563,530 - MIT1002_00518 0.69 +0.4
563,530 - MIT1002_00518 0.69 -0.6
563,560 - MIT1002_00518 0.72 +0.4
563,623 - MIT1002_00518 0.77 +0.7
563,650 + MIT1002_00518 0.79 -0.0
563,658 - MIT1002_00518 0.79 +1.4
563,658 - MIT1002_00518 0.79 +1.8
563,677 + MIT1002_00518 0.81 +1.3
563,685 - MIT1002_00518 0.81 -1.3
563,687 - MIT1002_00518 0.81 +2.5
563,734 - MIT1002_00518 0.85 -0.4
563,792 + MIT1002_00518 0.90 +0.2
563,807 - -0.0
563,819 + -0.1
563,819 + +2.1
563,827 - -0.8
563,829 + -1.2
563,865 + -1.8
563,910 - +0.4
563,924 - -0.6
563,924 - -0.8
564,006 + +2.7
564,006 + -1.1
564,014 - -0.2
564,014 - -0.2
564,049 + +0.2
564,050 - -0.1
564,086 + +1.0
564,094 + +0.8
564,165 + +1.0
564,166 - -0.8
564,190 + +1.4
564,200 + -3.2
564,205 - +0.8
564,205 - +1.7
564,281 + MIT1002_00519 0.12 -0.3
564,289 - MIT1002_00519 0.12 +0.9
564,432 - MIT1002_00519 0.17 -0.3
564,439 - MIT1002_00519 0.17 +1.6
564,439 - MIT1002_00519 0.17 -0.6
564,464 + MIT1002_00519 0.18 +1.8
564,607 - MIT1002_00519 0.23 +2.2
564,615 + MIT1002_00519 0.24 -0.2
564,667 + MIT1002_00519 0.25 -1.6
564,667 + MIT1002_00519 0.25 -0.6
564,673 + MIT1002_00519 0.26 +1.2
564,686 - MIT1002_00519 0.26 +1.4
564,809 + MIT1002_00519 0.30 -0.3
564,916 + MIT1002_00519 0.34 +1.5

Or see this region's nucleotide sequence