Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00444

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00442 and MIT1002_00443 are separated by 171 nucleotidesMIT1002_00443 and MIT1002_00444 are separated by 9 nucleotidesMIT1002_00444 and MIT1002_00445 are separated by 83 nucleotides MIT1002_00442: MIT1002_00442 - Bacterial protein of unknown function (Gcw_chp), at 484,244 to 484,969 _00442 MIT1002_00443: MIT1002_00443 - hypothetical protein, at 485,141 to 485,449 _00443 MIT1002_00444: MIT1002_00444 - hypothetical protein, at 485,459 to 485,659 _00444 MIT1002_00445: MIT1002_00445 - DNA adenine methylase, at 485,743 to 486,624 _00445 Position (kb) 485 486Strain fitness (log2 ratio) -2 -1 0 1 2 3at 484.494 kb on + strand, within MIT1002_00442at 484.516 kb on - strand, within MIT1002_00442at 484.533 kb on + strand, within MIT1002_00442at 484.534 kb on + strand, within MIT1002_00442at 484.610 kb on + strand, within MIT1002_00442at 484.618 kb on - strand, within MIT1002_00442at 484.632 kb on - strand, within MIT1002_00442at 484.635 kb on + strand, within MIT1002_00442at 484.647 kb on + strand, within MIT1002_00442at 484.657 kb on - strand, within MIT1002_00442at 484.666 kb on + strand, within MIT1002_00442at 484.666 kb on + strand, within MIT1002_00442at 484.666 kb on + strand, within MIT1002_00442at 484.674 kb on - strand, within MIT1002_00442at 484.720 kb on - strand, within MIT1002_00442at 484.755 kb on + strand, within MIT1002_00442at 484.755 kb on + strand, within MIT1002_00442at 484.805 kb on + strand, within MIT1002_00442at 484.813 kb on - strand, within MIT1002_00442at 484.815 kb on + strand, within MIT1002_00442at 484.815 kb on + strand, within MIT1002_00442at 484.815 kb on + strand, within MIT1002_00442at 484.822 kb on + strand, within MIT1002_00442at 484.823 kb on - strand, within MIT1002_00442at 484.824 kb on + strand, within MIT1002_00442at 484.867 kb on - strand, within MIT1002_00442at 484.884 kb on - strand, within MIT1002_00442at 484.966 kb on + strandat 484.972 kb on + strandat 485.035 kb on - strandat 485.311 kb on - strand, within MIT1002_00443at 485.321 kb on - strand, within MIT1002_00443at 485.321 kb on - strand, within MIT1002_00443at 485.335 kb on + strand, within MIT1002_00443at 485.472 kb on - strandat 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.486 kb on + strand, within MIT1002_00444at 485.494 kb on - strand, within MIT1002_00444at 485.494 kb on - strand, within MIT1002_00444at 485.494 kb on - strand, within MIT1002_00444at 485.494 kb on - strand, within MIT1002_00444at 485.494 kb on - strand, within MIT1002_00444at 485.494 kb on - strand, within MIT1002_00444at 485.494 kb on - strand, within MIT1002_00444at 485.494 kb on - strand, within MIT1002_00444at 485.494 kb on - strand, within MIT1002_00444at 485.494 kb on - strand, within MIT1002_00444at 485.494 kb on - strand, within MIT1002_00444at 485.507 kb on + strand, within MIT1002_00444at 485.527 kb on - strand, within MIT1002_00444at 485.644 kb on + strandat 485.645 kb on + strandat 485.713 kb on + strandat 485.741 kb on - strandat 485.756 kb on - strandat 485.800 kb on - strandat 486.558 kb on - strandat 486.633 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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484,494 + MIT1002_00442 0.34 -0.7
484,516 - MIT1002_00442 0.37 -0.4
484,533 + MIT1002_00442 0.40 +0.1
484,534 + MIT1002_00442 0.40 -0.3
484,610 + MIT1002_00442 0.50 +0.3
484,618 - MIT1002_00442 0.52 +0.2
484,632 - MIT1002_00442 0.53 -0.2
484,635 + MIT1002_00442 0.54 +0.6
484,647 + MIT1002_00442 0.56 -1.2
484,657 - MIT1002_00442 0.57 -1.0
484,666 + MIT1002_00442 0.58 +1.2
484,666 + MIT1002_00442 0.58 -0.8
484,666 + MIT1002_00442 0.58 -0.3
484,674 - MIT1002_00442 0.59 -0.7
484,720 - MIT1002_00442 0.66 +1.6
484,755 + MIT1002_00442 0.70 -0.4
484,755 + MIT1002_00442 0.70 -1.7
484,805 + MIT1002_00442 0.77 +1.3
484,813 - MIT1002_00442 0.78 -0.0
484,815 + MIT1002_00442 0.79 +1.2
484,815 + MIT1002_00442 0.79 +0.8
484,815 + MIT1002_00442 0.79 -2.0
484,822 + MIT1002_00442 0.80 -0.5
484,823 - MIT1002_00442 0.80 +2.9
484,824 + MIT1002_00442 0.80 +0.7
484,867 - MIT1002_00442 0.86 +1.2
484,884 - MIT1002_00442 0.88 +0.5
484,966 + +0.4
484,972 + -2.4
485,035 - -0.0
485,311 - MIT1002_00443 0.55 +2.1
485,321 - MIT1002_00443 0.58 +2.5
485,321 - MIT1002_00443 0.58 +1.0
485,335 + MIT1002_00443 0.63 +2.2
485,472 - -1.0
485,486 + MIT1002_00444 0.13 +0.6
485,486 + MIT1002_00444 0.13 -0.0
485,486 + MIT1002_00444 0.13 +1.5
485,486 + MIT1002_00444 0.13 +0.2
485,486 + MIT1002_00444 0.13 +1.1
485,486 + MIT1002_00444 0.13 -2.1
485,486 + MIT1002_00444 0.13 +1.4
485,486 + MIT1002_00444 0.13 +0.1
485,486 + MIT1002_00444 0.13 +2.6
485,486 + MIT1002_00444 0.13 -0.8
485,486 + MIT1002_00444 0.13 -1.9
485,486 + MIT1002_00444 0.13 +0.1
485,486 + MIT1002_00444 0.13 -0.3
485,486 + MIT1002_00444 0.13 +0.7
485,486 + MIT1002_00444 0.13 +0.4
485,486 + MIT1002_00444 0.13 -0.3
485,486 + MIT1002_00444 0.13 +1.6
485,486 + MIT1002_00444 0.13 +2.0
485,486 + MIT1002_00444 0.13 +0.2
485,486 + MIT1002_00444 0.13 +0.9
485,486 + MIT1002_00444 0.13 -1.0
485,486 + MIT1002_00444 0.13 +0.5
485,486 + MIT1002_00444 0.13 +2.7
485,486 + MIT1002_00444 0.13 -1.8
485,486 + MIT1002_00444 0.13 +2.5
485,486 + MIT1002_00444 0.13 +0.6
485,486 + MIT1002_00444 0.13 -2.1
485,486 + MIT1002_00444 0.13 -0.2
485,494 - MIT1002_00444 0.17 -0.1
485,494 - MIT1002_00444 0.17 -0.4
485,494 - MIT1002_00444 0.17 +0.7
485,494 - MIT1002_00444 0.17 -0.7
485,494 - MIT1002_00444 0.17 +0.3
485,494 - MIT1002_00444 0.17 -0.0
485,494 - MIT1002_00444 0.17 -0.7
485,494 - MIT1002_00444 0.17 -2.3
485,494 - MIT1002_00444 0.17 +2.9
485,494 - MIT1002_00444 0.17 +1.6
485,494 - MIT1002_00444 0.17 +1.2
485,507 + MIT1002_00444 0.24 -0.8
485,527 - MIT1002_00444 0.34 -0.6
485,644 + +0.5
485,645 + +0.2
485,713 + -1.5
485,741 - -1.0
485,756 - -2.4
485,800 - -1.6
486,558 - -0.4
486,633 - +1.4

Or see this region's nucleotide sequence