Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00408

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00407 and MIT1002_00408 are separated by 76 nucleotidesMIT1002_00408 and MIT1002_00409 are separated by 267 nucleotides MIT1002_00407: MIT1002_00407 - Nickel uptake substrate-specific transmembrane region, at 438,497 to 439,321 _00407 MIT1002_00408: MIT1002_00408 - Membrane-bound lytic murein transglycosylase B precursor, at 439,398 to 440,681 _00408 MIT1002_00409: MIT1002_00409 - Murein polymerase, at 440,949 to 443,300 _00409 Position (kb) 439 440 441Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 438.428 kb on + strandat 438.466 kb on - strandat 438.483 kb on + strandat 438.622 kb on + strand, within MIT1002_00407at 438.640 kb on + strand, within MIT1002_00407at 438.653 kb on + strand, within MIT1002_00407at 438.661 kb on - strand, within MIT1002_00407at 438.661 kb on - strand, within MIT1002_00407at 438.661 kb on - strand, within MIT1002_00407at 438.670 kb on + strand, within MIT1002_00407at 438.670 kb on + strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.699 kb on + strand, within MIT1002_00407at 438.736 kb on + strand, within MIT1002_00407at 438.737 kb on + strand, within MIT1002_00407at 438.903 kb on - strand, within MIT1002_00407at 438.932 kb on + strand, within MIT1002_00407at 438.940 kb on + strand, within MIT1002_00407at 438.965 kb on - strand, within MIT1002_00407at 439.047 kb on - strand, within MIT1002_00407at 439.102 kb on - strand, within MIT1002_00407at 439.174 kb on + strand, within MIT1002_00407at 439.324 kb on + strandat 439.325 kb on + strandat 439.332 kb on - strandat 439.366 kb on - strandat 439.534 kb on + strand, within MIT1002_00408at 439.534 kb on + strand, within MIT1002_00408at 439.534 kb on + strand, within MIT1002_00408at 439.534 kb on + strand, within MIT1002_00408at 439.534 kb on + strand, within MIT1002_00408at 439.542 kb on - strand, within MIT1002_00408at 439.542 kb on - strand, within MIT1002_00408at 439.542 kb on - strand, within MIT1002_00408at 439.544 kb on + strand, within MIT1002_00408at 439.544 kb on + strand, within MIT1002_00408at 439.664 kb on - strand, within MIT1002_00408at 439.695 kb on + strand, within MIT1002_00408at 439.737 kb on + strand, within MIT1002_00408at 439.796 kb on + strand, within MIT1002_00408at 439.796 kb on + strand, within MIT1002_00408at 439.796 kb on + strand, within MIT1002_00408at 439.840 kb on - strand, within MIT1002_00408at 440.021 kb on - strand, within MIT1002_00408at 440.031 kb on + strand, within MIT1002_00408at 440.035 kb on - strand, within MIT1002_00408at 440.061 kb on + strand, within MIT1002_00408at 440.069 kb on - strand, within MIT1002_00408at 440.113 kb on - strand, within MIT1002_00408at 440.125 kb on - strand, within MIT1002_00408at 440.180 kb on + strand, within MIT1002_00408at 440.328 kb on - strand, within MIT1002_00408at 440.334 kb on + strand, within MIT1002_00408at 440.412 kb on + strand, within MIT1002_00408at 440.420 kb on - strand, within MIT1002_00408at 440.424 kb on + strand, within MIT1002_00408at 440.430 kb on + strand, within MIT1002_00408at 440.430 kb on + strand, within MIT1002_00408at 440.482 kb on - strand, within MIT1002_00408at 440.482 kb on - strand, within MIT1002_00408at 440.510 kb on + strand, within MIT1002_00408at 440.551 kb on - strand, within MIT1002_00408at 440.614 kb on + strandat 440.620 kb on + strandat 440.649 kb on + strandat 440.722 kb on - strandat 440.781 kb on - strandat 440.783 kb on + strandat 440.791 kb on - strandat 440.798 kb on + strandat 440.828 kb on + strandat 440.828 kb on + strandat 440.833 kb on - strandat 441.084 kb on - strandat 441.155 kb on + strandat 441.186 kb on + strand, within MIT1002_00409at 441.300 kb on + strand, within MIT1002_00409at 441.308 kb on - strand, within MIT1002_00409at 441.331 kb on + strand, within MIT1002_00409at 441.331 kb on + strand, within MIT1002_00409at 441.339 kb on - strand, within MIT1002_00409at 441.339 kb on - strand, within MIT1002_00409at 441.347 kb on - strand, within MIT1002_00409at 441.347 kb on - strand, within MIT1002_00409at 441.439 kb on + strand, within MIT1002_00409at 441.523 kb on + strand, within MIT1002_00409at 441.582 kb on + strand, within MIT1002_00409at 441.583 kb on - strand, within MIT1002_00409at 441.632 kb on - strand, within MIT1002_00409

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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438,428 + +0.4
438,466 - +0.4
438,483 + -2.9
438,622 + MIT1002_00407 0.15 +3.8
438,640 + MIT1002_00407 0.17 -0.3
438,653 + MIT1002_00407 0.19 -0.3
438,661 - MIT1002_00407 0.20 +0.4
438,661 - MIT1002_00407 0.20 -1.7
438,661 - MIT1002_00407 0.20 -0.5
438,670 + MIT1002_00407 0.21 +2.9
438,670 + MIT1002_00407 0.21 +0.6
438,678 - MIT1002_00407 0.22 +1.7
438,678 - MIT1002_00407 0.22 -0.3
438,678 - MIT1002_00407 0.22 +0.2
438,678 - MIT1002_00407 0.22 +1.0
438,678 - MIT1002_00407 0.22 +0.5
438,678 - MIT1002_00407 0.22 +0.1
438,699 + MIT1002_00407 0.24 +0.0
438,736 + MIT1002_00407 0.29 +0.2
438,737 + MIT1002_00407 0.29 +0.4
438,903 - MIT1002_00407 0.49 +0.3
438,932 + MIT1002_00407 0.53 -0.7
438,940 + MIT1002_00407 0.54 -0.1
438,965 - MIT1002_00407 0.57 +0.1
439,047 - MIT1002_00407 0.67 +0.1
439,102 - MIT1002_00407 0.73 -0.2
439,174 + MIT1002_00407 0.82 -0.1
439,324 + -1.3
439,325 + +0.8
439,332 - -0.5
439,366 - +0.8
439,534 + MIT1002_00408 0.11 -1.0
439,534 + MIT1002_00408 0.11 +0.1
439,534 + MIT1002_00408 0.11 +0.8
439,534 + MIT1002_00408 0.11 +0.5
439,534 + MIT1002_00408 0.11 -0.8
439,542 - MIT1002_00408 0.11 +0.4
439,542 - MIT1002_00408 0.11 +0.4
439,542 - MIT1002_00408 0.11 +0.2
439,544 + MIT1002_00408 0.11 +0.4
439,544 + MIT1002_00408 0.11 +1.0
439,664 - MIT1002_00408 0.21 +0.5
439,695 + MIT1002_00408 0.23 -0.5
439,737 + MIT1002_00408 0.26 -0.3
439,796 + MIT1002_00408 0.31 -0.8
439,796 + MIT1002_00408 0.31 -0.6
439,796 + MIT1002_00408 0.31 -0.3
439,840 - MIT1002_00408 0.34 +0.5
440,021 - MIT1002_00408 0.49 +1.3
440,031 + MIT1002_00408 0.49 +1.1
440,035 - MIT1002_00408 0.50 +0.7
440,061 + MIT1002_00408 0.52 -0.5
440,069 - MIT1002_00408 0.52 -1.2
440,113 - MIT1002_00408 0.56 +0.4
440,125 - MIT1002_00408 0.57 +1.2
440,180 + MIT1002_00408 0.61 -0.3
440,328 - MIT1002_00408 0.72 -1.8
440,334 + MIT1002_00408 0.73 -0.7
440,412 + MIT1002_00408 0.79 +0.3
440,420 - MIT1002_00408 0.80 -2.3
440,424 + MIT1002_00408 0.80 +0.7
440,430 + MIT1002_00408 0.80 +0.3
440,430 + MIT1002_00408 0.80 +0.7
440,482 - MIT1002_00408 0.84 +1.3
440,482 - MIT1002_00408 0.84 -0.0
440,510 + MIT1002_00408 0.87 -1.4
440,551 - MIT1002_00408 0.90 +0.3
440,614 + +0.4
440,620 + -1.4
440,649 + -0.1
440,722 - -0.8
440,781 - -0.0
440,783 + -0.9
440,791 - +0.8
440,798 + +0.6
440,828 + +1.5
440,828 + -2.5
440,833 - +0.8
441,084 - +1.6
441,155 + -0.0
441,186 + MIT1002_00409 0.10 -1.4
441,300 + MIT1002_00409 0.15 -1.4
441,308 - MIT1002_00409 0.15 -0.9
441,331 + MIT1002_00409 0.16 -1.5
441,331 + MIT1002_00409 0.16 +1.0
441,339 - MIT1002_00409 0.17 +0.4
441,339 - MIT1002_00409 0.17 -0.2
441,347 - MIT1002_00409 0.17 +0.3
441,347 - MIT1002_00409 0.17 -0.6
441,439 + MIT1002_00409 0.21 -2.1
441,523 + MIT1002_00409 0.24 +0.1
441,582 + MIT1002_00409 0.27 -0.3
441,583 - MIT1002_00409 0.27 +0.4
441,632 - MIT1002_00409 0.29 -0.4

Or see this region's nucleotide sequence