Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00358

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00356 and MIT1002_00357 are separated by 92 nucleotidesMIT1002_00357 and MIT1002_00358 are separated by 1 nucleotidesMIT1002_00358 and MIT1002_00359 overlap by 4 nucleotidesMIT1002_00359 and MIT1002_00360 overlap by 8 nucleotides MIT1002_00356: MIT1002_00356 - phosphoglycolate phosphatase, at 384,019 to 384,522 _00356 MIT1002_00357: MIT1002_00357 - hypothetical protein, at 384,615 to 385,502 _00357 MIT1002_00358: MIT1002_00358 - hypothetical protein, at 385,504 to 387,405 _00358 MIT1002_00359: MIT1002_00359 - hypothetical protein, at 387,402 to 388,331 _00359 MIT1002_00360: MIT1002_00360 - trans-aconitate 2-methyltransferase, at 388,324 to 389,388 _00360 Position (kb) 385 386 387 388Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 384.526 kb on + strandat 384.579 kb on - strandat 384.650 kb on - strandat 384.661 kb on - strandat 384.661 kb on - strandat 384.682 kb on + strandat 384.695 kb on - strandat 384.788 kb on + strand, within MIT1002_00357at 384.856 kb on - strand, within MIT1002_00357at 384.858 kb on + strand, within MIT1002_00357at 384.870 kb on - strand, within MIT1002_00357at 384.908 kb on + strand, within MIT1002_00357at 384.913 kb on + strand, within MIT1002_00357at 384.913 kb on + strand, within MIT1002_00357at 384.914 kb on + strand, within MIT1002_00357at 384.914 kb on + strand, within MIT1002_00357at 384.914 kb on + strand, within MIT1002_00357at 384.914 kb on + strand, within MIT1002_00357at 384.921 kb on - strand, within MIT1002_00357at 384.921 kb on - strand, within MIT1002_00357at 384.921 kb on - strand, within MIT1002_00357at 384.921 kb on - strand, within MIT1002_00357at 384.922 kb on - strand, within MIT1002_00357at 384.922 kb on - strand, within MIT1002_00357at 384.922 kb on - strand, within MIT1002_00357at 384.922 kb on - strand, within MIT1002_00357at 384.922 kb on - strand, within MIT1002_00357at 384.929 kb on + strand, within MIT1002_00357at 384.996 kb on + strand, within MIT1002_00357at 385.030 kb on + strand, within MIT1002_00357at 385.038 kb on - strand, within MIT1002_00357at 385.102 kb on - strand, within MIT1002_00357at 385.105 kb on - strand, within MIT1002_00357at 385.138 kb on - strand, within MIT1002_00357at 385.153 kb on + strand, within MIT1002_00357at 385.161 kb on - strand, within MIT1002_00357at 385.219 kb on + strand, within MIT1002_00357at 385.261 kb on - strand, within MIT1002_00357at 385.333 kb on + strand, within MIT1002_00357at 385.333 kb on + strand, within MIT1002_00357at 385.333 kb on + strand, within MIT1002_00357at 385.333 kb on - strand, within MIT1002_00357at 385.334 kb on - strand, within MIT1002_00357at 385.341 kb on - strand, within MIT1002_00357at 385.341 kb on - strand, within MIT1002_00357at 385.341 kb on - strand, within MIT1002_00357at 385.341 kb on - strand, within MIT1002_00357at 385.341 kb on - strand, within MIT1002_00357at 385.341 kb on - strand, within MIT1002_00357at 385.358 kb on - strand, within MIT1002_00357at 385.422 kb on - strandat 385.422 kb on - strandat 385.435 kb on + strandat 385.472 kb on + strandat 385.522 kb on - strandat 385.522 kb on - strandat 385.550 kb on - strandat 385.553 kb on - strandat 385.553 kb on - strandat 385.553 kb on - strandat 385.553 kb on - strandat 385.639 kb on - strandat 385.643 kb on - strandat 385.657 kb on + strandat 385.662 kb on + strandat 385.664 kb on - strandat 385.664 kb on - strandat 385.670 kb on - strandat 385.677 kb on - strandat 385.677 kb on - strandat 385.706 kb on + strand, within MIT1002_00358at 385.706 kb on + strand, within MIT1002_00358at 385.706 kb on + strand, within MIT1002_00358at 385.714 kb on - strand, within MIT1002_00358at 385.714 kb on - strand, within MIT1002_00358at 385.714 kb on - strand, within MIT1002_00358at 385.728 kb on - strand, within MIT1002_00358at 385.934 kb on - strand, within MIT1002_00358at 385.952 kb on + strand, within MIT1002_00358at 385.991 kb on + strand, within MIT1002_00358at 385.999 kb on - strand, within MIT1002_00358at 385.999 kb on - strand, within MIT1002_00358at 386.051 kb on + strand, within MIT1002_00358at 386.059 kb on - strand, within MIT1002_00358at 386.059 kb on - strand, within MIT1002_00358at 386.077 kb on + strand, within MIT1002_00358at 386.107 kb on - strand, within MIT1002_00358at 386.107 kb on - strand, within MIT1002_00358at 386.193 kb on - strand, within MIT1002_00358at 386.193 kb on - strand, within MIT1002_00358at 386.193 kb on - strand, within MIT1002_00358at 386.193 kb on - strand, within MIT1002_00358at 386.197 kb on + strand, within MIT1002_00358at 386.232 kb on + strand, within MIT1002_00358at 386.374 kb on - strand, within MIT1002_00358at 386.374 kb on - strand, within MIT1002_00358at 386.379 kb on - strand, within MIT1002_00358at 386.388 kb on + strand, within MIT1002_00358at 386.461 kb on + strand, within MIT1002_00358at 386.469 kb on - strand, within MIT1002_00358at 386.472 kb on + strand, within MIT1002_00358at 386.480 kb on - strand, within MIT1002_00358at 386.538 kb on + strand, within MIT1002_00358at 386.550 kb on - strand, within MIT1002_00358at 386.576 kb on + strand, within MIT1002_00358at 386.579 kb on - strand, within MIT1002_00358at 386.579 kb on - strand, within MIT1002_00358at 386.599 kb on + strand, within MIT1002_00358at 386.599 kb on + strand, within MIT1002_00358at 386.599 kb on + strand, within MIT1002_00358at 386.599 kb on + strand, within MIT1002_00358at 386.607 kb on - strand, within MIT1002_00358at 386.607 kb on - strand, within MIT1002_00358at 386.757 kb on - strand, within MIT1002_00358at 386.878 kb on - strand, within MIT1002_00358at 386.919 kb on - strand, within MIT1002_00358at 387.003 kb on - strand, within MIT1002_00358at 387.015 kb on + strand, within MIT1002_00358at 387.114 kb on - strand, within MIT1002_00358at 387.288 kb on + strandat 387.288 kb on + strandat 387.461 kb on + strandat 387.498 kb on + strand, within MIT1002_00359at 387.513 kb on - strand, within MIT1002_00359at 387.515 kb on + strand, within MIT1002_00359at 387.517 kb on + strand, within MIT1002_00359at 387.517 kb on + strand, within MIT1002_00359at 387.525 kb on - strand, within MIT1002_00359at 387.539 kb on + strand, within MIT1002_00359at 387.549 kb on + strand, within MIT1002_00359at 387.549 kb on - strand, within MIT1002_00359at 387.551 kb on + strand, within MIT1002_00359at 387.551 kb on + strand, within MIT1002_00359at 387.551 kb on + strand, within MIT1002_00359at 387.551 kb on + strand, within MIT1002_00359at 387.559 kb on - strand, within MIT1002_00359at 387.559 kb on - strand, within MIT1002_00359at 387.559 kb on - strand, within MIT1002_00359at 387.559 kb on - strand, within MIT1002_00359at 387.586 kb on + strand, within MIT1002_00359at 387.594 kb on - strand, within MIT1002_00359at 387.594 kb on - strand, within MIT1002_00359at 387.594 kb on - strand, within MIT1002_00359at 387.594 kb on - strand, within MIT1002_00359at 387.598 kb on + strand, within MIT1002_00359at 387.598 kb on + strand, within MIT1002_00359at 387.605 kb on + strand, within MIT1002_00359at 387.605 kb on + strand, within MIT1002_00359at 387.613 kb on - strand, within MIT1002_00359at 387.613 kb on - strand, within MIT1002_00359at 387.621 kb on - strand, within MIT1002_00359at 387.628 kb on + strand, within MIT1002_00359at 387.658 kb on - strand, within MIT1002_00359at 387.694 kb on + strand, within MIT1002_00359at 387.745 kb on + strand, within MIT1002_00359at 387.753 kb on - strand, within MIT1002_00359at 387.759 kb on - strand, within MIT1002_00359at 387.763 kb on - strand, within MIT1002_00359at 387.768 kb on + strand, within MIT1002_00359at 387.786 kb on - strand, within MIT1002_00359at 387.796 kb on - strand, within MIT1002_00359at 387.851 kb on - strand, within MIT1002_00359at 387.874 kb on - strand, within MIT1002_00359at 387.952 kb on + strand, within MIT1002_00359at 388.112 kb on + strand, within MIT1002_00359at 388.137 kb on - strand, within MIT1002_00359at 388.238 kb on + strand, within MIT1002_00359at 388.238 kb on + strand, within MIT1002_00359at 388.251 kb on - strandat 388.320 kb on - strandat 388.320 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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384,526 + +0.8
384,579 - -0.4
384,650 - -0.1
384,661 - +0.7
384,661 - +0.5
384,682 + -0.5
384,695 - +0.1
384,788 + MIT1002_00357 0.19 +0.9
384,856 - MIT1002_00357 0.27 -0.8
384,858 + MIT1002_00357 0.27 -0.3
384,870 - MIT1002_00357 0.29 +0.0
384,908 + MIT1002_00357 0.33 -0.6
384,913 + MIT1002_00357 0.34 -0.1
384,913 + MIT1002_00357 0.34 +0.4
384,914 + MIT1002_00357 0.34 -0.1
384,914 + MIT1002_00357 0.34 +0.5
384,914 + MIT1002_00357 0.34 -0.3
384,914 + MIT1002_00357 0.34 +1.3
384,921 - MIT1002_00357 0.34 +1.2
384,921 - MIT1002_00357 0.34 -1.2
384,921 - MIT1002_00357 0.34 +0.8
384,921 - MIT1002_00357 0.34 -0.3
384,922 - MIT1002_00357 0.35 -0.1
384,922 - MIT1002_00357 0.35 -1.5
384,922 - MIT1002_00357 0.35 +1.6
384,922 - MIT1002_00357 0.35 +1.0
384,922 - MIT1002_00357 0.35 +1.6
384,929 + MIT1002_00357 0.35 -0.1
384,996 + MIT1002_00357 0.43 +0.5
385,030 + MIT1002_00357 0.47 -0.5
385,038 - MIT1002_00357 0.48 -1.0
385,102 - MIT1002_00357 0.55 -0.2
385,105 - MIT1002_00357 0.55 +0.7
385,138 - MIT1002_00357 0.59 -1.1
385,153 + MIT1002_00357 0.61 +2.3
385,161 - MIT1002_00357 0.61 +1.0
385,219 + MIT1002_00357 0.68 -0.5
385,261 - MIT1002_00357 0.73 -0.9
385,333 + MIT1002_00357 0.81 +1.1
385,333 + MIT1002_00357 0.81 -1.9
385,333 + MIT1002_00357 0.81 +0.0
385,333 - MIT1002_00357 0.81 -0.8
385,334 - MIT1002_00357 0.81 +0.4
385,341 - MIT1002_00357 0.82 -0.3
385,341 - MIT1002_00357 0.82 +0.7
385,341 - MIT1002_00357 0.82 -0.9
385,341 - MIT1002_00357 0.82 +0.8
385,341 - MIT1002_00357 0.82 +0.3
385,341 - MIT1002_00357 0.82 +0.6
385,358 - MIT1002_00357 0.84 +0.6
385,422 - -0.0
385,422 - -0.9
385,435 + +2.3
385,472 + +0.8
385,522 - -0.6
385,522 - +0.2
385,550 - -0.3
385,553 - -0.7
385,553 - +0.7
385,553 - -0.9
385,553 - -0.4
385,639 - +2.1
385,643 - -0.8
385,657 + -1.7
385,662 + -1.7
385,664 - +0.8
385,664 - +0.3
385,670 - +1.4
385,677 - -0.6
385,677 - +0.2
385,706 + MIT1002_00358 0.11 -1.0
385,706 + MIT1002_00358 0.11 -0.6
385,706 + MIT1002_00358 0.11 -0.0
385,714 - MIT1002_00358 0.11 -0.6
385,714 - MIT1002_00358 0.11 +1.4
385,714 - MIT1002_00358 0.11 +0.4
385,728 - MIT1002_00358 0.12 -0.6
385,934 - MIT1002_00358 0.23 -0.2
385,952 + MIT1002_00358 0.24 -0.5
385,991 + MIT1002_00358 0.26 -2.9
385,999 - MIT1002_00358 0.26 +0.8
385,999 - MIT1002_00358 0.26 -2.1
386,051 + MIT1002_00358 0.29 +0.4
386,059 - MIT1002_00358 0.29 -0.6
386,059 - MIT1002_00358 0.29 -0.9
386,077 + MIT1002_00358 0.30 +1.6
386,107 - MIT1002_00358 0.32 +0.2
386,107 - MIT1002_00358 0.32 -0.6
386,193 - MIT1002_00358 0.36 -1.0
386,193 - MIT1002_00358 0.36 -0.2
386,193 - MIT1002_00358 0.36 +1.0
386,193 - MIT1002_00358 0.36 -0.2
386,197 + MIT1002_00358 0.36 +0.1
386,232 + MIT1002_00358 0.38 -0.7
386,374 - MIT1002_00358 0.46 -0.3
386,374 - MIT1002_00358 0.46 -0.2
386,379 - MIT1002_00358 0.46 +0.5
386,388 + MIT1002_00358 0.46 -1.3
386,461 + MIT1002_00358 0.50 +0.2
386,469 - MIT1002_00358 0.51 +0.5
386,472 + MIT1002_00358 0.51 -3.3
386,480 - MIT1002_00358 0.51 -0.4
386,538 + MIT1002_00358 0.54 -0.9
386,550 - MIT1002_00358 0.55 -3.2
386,576 + MIT1002_00358 0.56 -0.6
386,579 - MIT1002_00358 0.57 -0.3
386,579 - MIT1002_00358 0.57 +0.8
386,599 + MIT1002_00358 0.58 -0.0
386,599 + MIT1002_00358 0.58 +0.3
386,599 + MIT1002_00358 0.58 -0.6
386,599 + MIT1002_00358 0.58 -0.0
386,607 - MIT1002_00358 0.58 -1.7
386,607 - MIT1002_00358 0.58 -0.4
386,757 - MIT1002_00358 0.66 +1.7
386,878 - MIT1002_00358 0.72 +0.5
386,919 - MIT1002_00358 0.74 -2.1
387,003 - MIT1002_00358 0.79 +1.7
387,015 + MIT1002_00358 0.79 -1.7
387,114 - MIT1002_00358 0.85 +0.8
387,288 + -1.1
387,288 + -2.1
387,461 + -0.3
387,498 + MIT1002_00359 0.10 -1.5
387,513 - MIT1002_00359 0.12 +0.1
387,515 + MIT1002_00359 0.12 -0.0
387,517 + MIT1002_00359 0.12 +0.5
387,517 + MIT1002_00359 0.12 -2.2
387,525 - MIT1002_00359 0.13 +1.2
387,539 + MIT1002_00359 0.15 -0.9
387,549 + MIT1002_00359 0.16 +1.0
387,549 - MIT1002_00359 0.16 +2.2
387,551 + MIT1002_00359 0.16 -0.9
387,551 + MIT1002_00359 0.16 -0.9
387,551 + MIT1002_00359 0.16 -1.2
387,551 + MIT1002_00359 0.16 +0.4
387,559 - MIT1002_00359 0.17 +1.1
387,559 - MIT1002_00359 0.17 +0.6
387,559 - MIT1002_00359 0.17 -0.3
387,559 - MIT1002_00359 0.17 -1.1
387,586 + MIT1002_00359 0.20 +0.2
387,594 - MIT1002_00359 0.21 +1.2
387,594 - MIT1002_00359 0.21 +1.0
387,594 - MIT1002_00359 0.21 +2.1
387,594 - MIT1002_00359 0.21 +0.4
387,598 + MIT1002_00359 0.21 +0.3
387,598 + MIT1002_00359 0.21 +1.4
387,605 + MIT1002_00359 0.22 -0.6
387,605 + MIT1002_00359 0.22 +1.8
387,613 - MIT1002_00359 0.23 +0.1
387,613 - MIT1002_00359 0.23 +0.6
387,621 - MIT1002_00359 0.24 -0.3
387,628 + MIT1002_00359 0.24 +2.6
387,658 - MIT1002_00359 0.28 +2.0
387,694 + MIT1002_00359 0.31 -2.3
387,745 + MIT1002_00359 0.37 +0.2
387,753 - MIT1002_00359 0.38 -1.8
387,759 - MIT1002_00359 0.38 +1.0
387,763 - MIT1002_00359 0.39 +1.0
387,768 + MIT1002_00359 0.39 -0.4
387,786 - MIT1002_00359 0.41 -0.5
387,796 - MIT1002_00359 0.42 +2.1
387,851 - MIT1002_00359 0.48 -0.4
387,874 - MIT1002_00359 0.51 -1.3
387,952 + MIT1002_00359 0.59 +0.8
388,112 + MIT1002_00359 0.76 -0.1
388,137 - MIT1002_00359 0.79 -0.2
388,238 + MIT1002_00359 0.90 -0.3
388,238 + MIT1002_00359 0.90 -0.6
388,251 - +0.5
388,320 - -1.2
388,320 - +1.8

Or see this region's nucleotide sequence