Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00268

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00266 and MIT1002_00267 are separated by 28 nucleotidesMIT1002_00267 and MIT1002_00268 overlap by 4 nucleotidesMIT1002_00268 and MIT1002_00269 overlap by 1 nucleotidesMIT1002_00269 and MIT1002_00270 overlap by 4 nucleotides MIT1002_00266: MIT1002_00266 - hypothetical protein, at 292,397 to 292,753 _00266 MIT1002_00267: MIT1002_00267 - hypothetical protein, at 292,782 to 293,627 _00267 MIT1002_00268: MIT1002_00268 - 1,2-phenylacetyl-CoA epoxidase, subunit E, at 293,624 to 295,558 _00268 MIT1002_00269: MIT1002_00269 - hypothetical protein, at 295,558 to 296,316 _00269 MIT1002_00270: MIT1002_00270 - Class III cytochrome C family protein, at 296,313 to 297,107 _00270 Position (kb) 293 294 295 296Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10 11at 292.681 kb on - strand, within MIT1002_00266at 292.681 kb on - strand, within MIT1002_00266at 292.777 kb on - strandat 292.814 kb on - strandat 292.861 kb on - strandat 292.872 kb on + strand, within MIT1002_00267at 292.878 kb on - strand, within MIT1002_00267at 292.885 kb on + strand, within MIT1002_00267at 292.885 kb on + strand, within MIT1002_00267at 292.893 kb on - strand, within MIT1002_00267at 292.947 kb on + strand, within MIT1002_00267at 292.955 kb on - strand, within MIT1002_00267at 293.026 kb on + strand, within MIT1002_00267at 293.026 kb on + strand, within MIT1002_00267at 293.034 kb on - strand, within MIT1002_00267at 293.185 kb on + strand, within MIT1002_00267at 293.203 kb on - strand, within MIT1002_00267at 293.206 kb on - strand, within MIT1002_00267at 293.234 kb on - strand, within MIT1002_00267at 293.258 kb on - strand, within MIT1002_00267at 293.260 kb on + strand, within MIT1002_00267at 293.264 kb on + strand, within MIT1002_00267at 293.268 kb on - strand, within MIT1002_00267at 293.322 kb on - strand, within MIT1002_00267at 293.323 kb on - strand, within MIT1002_00267at 293.344 kb on - strand, within MIT1002_00267at 293.351 kb on - strand, within MIT1002_00267at 293.358 kb on + strand, within MIT1002_00267at 293.386 kb on + strand, within MIT1002_00267at 293.391 kb on + strand, within MIT1002_00267at 293.398 kb on + strand, within MIT1002_00267at 293.398 kb on + strand, within MIT1002_00267at 293.398 kb on + strand, within MIT1002_00267at 293.439 kb on + strand, within MIT1002_00267at 293.454 kb on + strand, within MIT1002_00267at 293.502 kb on + strand, within MIT1002_00267at 293.510 kb on - strand, within MIT1002_00267at 293.559 kb on + strandat 293.673 kb on + strandat 293.709 kb on + strandat 293.725 kb on - strandat 293.727 kb on - strandat 293.754 kb on + strandat 293.755 kb on + strandat 293.816 kb on - strandat 293.818 kb on + strand, within MIT1002_00268at 293.818 kb on + strand, within MIT1002_00268at 293.820 kb on + strand, within MIT1002_00268at 293.826 kb on - strand, within MIT1002_00268at 293.828 kb on - strand, within MIT1002_00268at 293.836 kb on - strand, within MIT1002_00268at 293.836 kb on - strand, within MIT1002_00268at 293.864 kb on - strand, within MIT1002_00268at 293.939 kb on - strand, within MIT1002_00268at 293.958 kb on - strand, within MIT1002_00268at 293.975 kb on + strand, within MIT1002_00268at 293.975 kb on + strand, within MIT1002_00268at 293.980 kb on + strand, within MIT1002_00268at 293.983 kb on - strand, within MIT1002_00268at 293.988 kb on - strand, within MIT1002_00268at 293.988 kb on - strand, within MIT1002_00268at 293.988 kb on - strand, within MIT1002_00268at 294.029 kb on + strand, within MIT1002_00268at 294.096 kb on + strand, within MIT1002_00268at 294.098 kb on + strand, within MIT1002_00268at 294.106 kb on - strand, within MIT1002_00268at 294.179 kb on + strand, within MIT1002_00268at 294.182 kb on - strand, within MIT1002_00268at 294.187 kb on - strand, within MIT1002_00268at 294.260 kb on + strand, within MIT1002_00268at 294.278 kb on - strand, within MIT1002_00268at 294.311 kb on + strand, within MIT1002_00268at 294.313 kb on - strand, within MIT1002_00268at 294.332 kb on - strand, within MIT1002_00268at 294.334 kb on + strand, within MIT1002_00268at 294.334 kb on + strand, within MIT1002_00268at 294.347 kb on - strand, within MIT1002_00268at 294.361 kb on + strand, within MIT1002_00268at 294.369 kb on - strand, within MIT1002_00268at 294.387 kb on + strand, within MIT1002_00268at 294.435 kb on - strand, within MIT1002_00268at 294.437 kb on + strand, within MIT1002_00268at 294.447 kb on + strand, within MIT1002_00268at 294.458 kb on + strand, within MIT1002_00268at 294.469 kb on - strand, within MIT1002_00268at 294.484 kb on + strand, within MIT1002_00268at 294.522 kb on - strand, within MIT1002_00268at 294.583 kb on - strand, within MIT1002_00268at 294.588 kb on - strand, within MIT1002_00268at 294.644 kb on - strand, within MIT1002_00268at 294.644 kb on - strand, within MIT1002_00268at 294.644 kb on - strand, within MIT1002_00268at 294.687 kb on - strand, within MIT1002_00268at 294.695 kb on - strand, within MIT1002_00268at 294.695 kb on - strand, within MIT1002_00268at 294.702 kb on + strand, within MIT1002_00268at 294.720 kb on - strand, within MIT1002_00268at 294.750 kb on + strand, within MIT1002_00268at 294.797 kb on - strand, within MIT1002_00268at 294.842 kb on + strand, within MIT1002_00268at 294.842 kb on + strand, within MIT1002_00268at 294.842 kb on + strand, within MIT1002_00268at 294.842 kb on + strand, within MIT1002_00268at 294.847 kb on + strand, within MIT1002_00268at 294.850 kb on - strand, within MIT1002_00268at 294.850 kb on - strand, within MIT1002_00268at 294.850 kb on - strand, within MIT1002_00268at 294.850 kb on - strand, within MIT1002_00268at 294.900 kb on - strand, within MIT1002_00268at 295.028 kb on + strand, within MIT1002_00268at 295.038 kb on + strand, within MIT1002_00268at 295.041 kb on - strand, within MIT1002_00268at 295.054 kb on + strand, within MIT1002_00268at 295.062 kb on - strand, within MIT1002_00268at 295.228 kb on + strand, within MIT1002_00268at 295.282 kb on + strand, within MIT1002_00268at 295.284 kb on - strand, within MIT1002_00268at 295.290 kb on - strand, within MIT1002_00268at 295.290 kb on - strand, within MIT1002_00268at 295.292 kb on + strand, within MIT1002_00268at 295.292 kb on + strand, within MIT1002_00268at 295.320 kb on - strand, within MIT1002_00268at 295.328 kb on + strand, within MIT1002_00268at 295.328 kb on + strand, within MIT1002_00268at 295.351 kb on - strand, within MIT1002_00268at 295.351 kb on - strand, within MIT1002_00268at 295.358 kb on + strand, within MIT1002_00268at 295.358 kb on + strand, within MIT1002_00268at 295.377 kb on + strandat 295.388 kb on + strandat 295.433 kb on - strandat 295.446 kb on + strandat 295.475 kb on + strandat 295.508 kb on + strandat 295.546 kb on + strandat 295.587 kb on - strandat 295.589 kb on + strandat 295.597 kb on + strandat 295.678 kb on + strand, within MIT1002_00269at 295.678 kb on + strand, within MIT1002_00269at 295.686 kb on - strand, within MIT1002_00269at 295.686 kb on - strand, within MIT1002_00269at 295.686 kb on - strand, within MIT1002_00269at 295.802 kb on + strand, within MIT1002_00269at 295.810 kb on + strand, within MIT1002_00269at 295.815 kb on - strand, within MIT1002_00269at 295.815 kb on - strand, within MIT1002_00269at 295.833 kb on + strand, within MIT1002_00269at 295.841 kb on - strand, within MIT1002_00269at 295.942 kb on - strand, within MIT1002_00269at 296.078 kb on - strand, within MIT1002_00269at 296.078 kb on - strand, within MIT1002_00269at 296.078 kb on - strand, within MIT1002_00269at 296.134 kb on + strand, within MIT1002_00269at 296.170 kb on + strand, within MIT1002_00269at 296.178 kb on - strand, within MIT1002_00269at 296.178 kb on - strand, within MIT1002_00269at 296.205 kb on + strand, within MIT1002_00269at 296.205 kb on + strand, within MIT1002_00269at 296.205 kb on + strand, within MIT1002_00269at 296.205 kb on + strand, within MIT1002_00269at 296.206 kb on - strand, within MIT1002_00269at 296.302 kb on - strandat 296.307 kb on - strandat 296.309 kb on + strandat 296.309 kb on + strandat 296.358 kb on - strandat 296.385 kb on + strandat 296.385 kb on + strandat 296.393 kb on - strand, within MIT1002_00270at 296.445 kb on + strand, within MIT1002_00270at 296.495 kb on - strand, within MIT1002_00270

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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292,681 - MIT1002_00266 0.80 -0.7
292,681 - MIT1002_00266 0.80 -0.3
292,777 - -0.9
292,814 - +1.7
292,861 - +0.9
292,872 + MIT1002_00267 0.11 -0.1
292,878 - MIT1002_00267 0.11 +0.1
292,885 + MIT1002_00267 0.12 -0.6
292,885 + MIT1002_00267 0.12 +0.9
292,893 - MIT1002_00267 0.13 -0.3
292,947 + MIT1002_00267 0.20 -1.5
292,955 - MIT1002_00267 0.20 +1.1
293,026 + MIT1002_00267 0.29 -1.6
293,026 + MIT1002_00267 0.29 -1.9
293,034 - MIT1002_00267 0.30 -0.4
293,185 + MIT1002_00267 0.48 +0.4
293,203 - MIT1002_00267 0.50 -1.4
293,206 - MIT1002_00267 0.50 +1.8
293,234 - MIT1002_00267 0.53 -1.2
293,258 - MIT1002_00267 0.56 -2.6
293,260 + MIT1002_00267 0.57 -0.9
293,264 + MIT1002_00267 0.57 -1.3
293,268 - MIT1002_00267 0.57 -1.4
293,322 - MIT1002_00267 0.64 -1.3
293,323 - MIT1002_00267 0.64 +1.3
293,344 - MIT1002_00267 0.66 +0.3
293,351 - MIT1002_00267 0.67 +0.7
293,358 + MIT1002_00267 0.68 -0.4
293,386 + MIT1002_00267 0.71 +0.2
293,391 + MIT1002_00267 0.72 -2.1
293,398 + MIT1002_00267 0.73 -0.2
293,398 + MIT1002_00267 0.73 +2.7
293,398 + MIT1002_00267 0.73 +0.7
293,439 + MIT1002_00267 0.78 +1.6
293,454 + MIT1002_00267 0.79 +1.0
293,502 + MIT1002_00267 0.85 -2.6
293,510 - MIT1002_00267 0.86 -0.2
293,559 + -0.8
293,673 + +0.9
293,709 + -0.8
293,725 - -0.2
293,727 - -0.6
293,754 + -0.6
293,755 + -0.7
293,816 - -0.9
293,818 + MIT1002_00268 0.10 +1.2
293,818 + MIT1002_00268 0.10 -1.5
293,820 + MIT1002_00268 0.10 -0.8
293,826 - MIT1002_00268 0.10 -1.3
293,828 - MIT1002_00268 0.11 -0.7
293,836 - MIT1002_00268 0.11 +0.8
293,836 - MIT1002_00268 0.11 -2.5
293,864 - MIT1002_00268 0.12 +0.7
293,939 - MIT1002_00268 0.16 -0.1
293,958 - MIT1002_00268 0.17 +0.3
293,975 + MIT1002_00268 0.18 -0.3
293,975 + MIT1002_00268 0.18 -0.0
293,980 + MIT1002_00268 0.18 +0.7
293,983 - MIT1002_00268 0.19 +0.6
293,988 - MIT1002_00268 0.19 -0.2
293,988 - MIT1002_00268 0.19 +1.6
293,988 - MIT1002_00268 0.19 +0.5
294,029 + MIT1002_00268 0.21 -0.5
294,096 + MIT1002_00268 0.24 +0.6
294,098 + MIT1002_00268 0.24 -0.0
294,106 - MIT1002_00268 0.25 -0.2
294,179 + MIT1002_00268 0.29 -1.1
294,182 - MIT1002_00268 0.29 -1.0
294,187 - MIT1002_00268 0.29 +1.2
294,260 + MIT1002_00268 0.33 -1.6
294,278 - MIT1002_00268 0.34 -0.4
294,311 + MIT1002_00268 0.36 +0.2
294,313 - MIT1002_00268 0.36 -1.0
294,332 - MIT1002_00268 0.37 -1.2
294,334 + MIT1002_00268 0.37 -1.5
294,334 + MIT1002_00268 0.37 +1.9
294,347 - MIT1002_00268 0.37 -0.7
294,361 + MIT1002_00268 0.38 -2.3
294,369 - MIT1002_00268 0.39 -0.9
294,387 + MIT1002_00268 0.39 -0.4
294,435 - MIT1002_00268 0.42 +0.1
294,437 + MIT1002_00268 0.42 -0.5
294,447 + MIT1002_00268 0.43 -1.5
294,458 + MIT1002_00268 0.43 -1.5
294,469 - MIT1002_00268 0.44 -0.8
294,484 + MIT1002_00268 0.44 -0.8
294,522 - MIT1002_00268 0.46 -1.4
294,583 - MIT1002_00268 0.50 -0.2
294,588 - MIT1002_00268 0.50 -1.3
294,644 - MIT1002_00268 0.53 -0.6
294,644 - MIT1002_00268 0.53 -0.2
294,644 - MIT1002_00268 0.53 -1.9
294,687 - MIT1002_00268 0.55 -0.1
294,695 - MIT1002_00268 0.55 -0.8
294,695 - MIT1002_00268 0.55 -1.4
294,702 + MIT1002_00268 0.56 +0.2
294,720 - MIT1002_00268 0.57 -1.0
294,750 + MIT1002_00268 0.58 -0.6
294,797 - MIT1002_00268 0.61 -1.2
294,842 + MIT1002_00268 0.63 -1.9
294,842 + MIT1002_00268 0.63 -1.0
294,842 + MIT1002_00268 0.63 -1.0
294,842 + MIT1002_00268 0.63 +1.0
294,847 + MIT1002_00268 0.63 +0.2
294,850 - MIT1002_00268 0.63 -0.1
294,850 - MIT1002_00268 0.63 -1.2
294,850 - MIT1002_00268 0.63 +1.0
294,850 - MIT1002_00268 0.63 +2.0
294,900 - MIT1002_00268 0.66 -1.8
295,028 + MIT1002_00268 0.73 -0.1
295,038 + MIT1002_00268 0.73 -0.8
295,041 - MIT1002_00268 0.73 +0.4
295,054 + MIT1002_00268 0.74 -0.7
295,062 - MIT1002_00268 0.74 -0.4
295,228 + MIT1002_00268 0.83 -1.4
295,282 + MIT1002_00268 0.86 -0.7
295,284 - MIT1002_00268 0.86 +0.2
295,290 - MIT1002_00268 0.86 -0.8
295,290 - MIT1002_00268 0.86 -0.6
295,292 + MIT1002_00268 0.86 -0.5
295,292 + MIT1002_00268 0.86 +1.0
295,320 - MIT1002_00268 0.88 -1.3
295,328 + MIT1002_00268 0.88 -0.4
295,328 + MIT1002_00268 0.88 -3.2
295,351 - MIT1002_00268 0.89 -0.6
295,351 - MIT1002_00268 0.89 +0.8
295,358 + MIT1002_00268 0.90 +0.7
295,358 + MIT1002_00268 0.90 -0.6
295,377 + +0.3
295,388 + +2.1
295,433 - -1.3
295,446 + +11.1
295,475 + +0.3
295,508 + +0.4
295,546 + +1.6
295,587 - -0.2
295,589 + +1.3
295,597 + -0.1
295,678 + MIT1002_00269 0.16 +0.9
295,678 + MIT1002_00269 0.16 +0.1
295,686 - MIT1002_00269 0.17 +0.4
295,686 - MIT1002_00269 0.17 -0.4
295,686 - MIT1002_00269 0.17 -1.0
295,802 + MIT1002_00269 0.32 -0.5
295,810 + MIT1002_00269 0.33 +0.2
295,815 - MIT1002_00269 0.34 -0.0
295,815 - MIT1002_00269 0.34 +1.6
295,833 + MIT1002_00269 0.36 +0.4
295,841 - MIT1002_00269 0.37 -1.3
295,942 - MIT1002_00269 0.51 -1.5
296,078 - MIT1002_00269 0.69 +1.0
296,078 - MIT1002_00269 0.69 -0.4
296,078 - MIT1002_00269 0.69 +1.1
296,134 + MIT1002_00269 0.76 -2.0
296,170 + MIT1002_00269 0.81 -1.7
296,178 - MIT1002_00269 0.82 -0.7
296,178 - MIT1002_00269 0.82 -0.8
296,205 + MIT1002_00269 0.85 -1.0
296,205 + MIT1002_00269 0.85 +0.4
296,205 + MIT1002_00269 0.85 -1.3
296,205 + MIT1002_00269 0.85 -1.5
296,206 - MIT1002_00269 0.85 -1.6
296,302 - +1.6
296,307 - -1.3
296,309 + -0.8
296,309 + -0.7
296,358 - -0.4
296,385 + +0.1
296,385 + -0.4
296,393 - MIT1002_00270 0.10 +2.2
296,445 + MIT1002_00270 0.17 -0.7
296,495 - MIT1002_00270 0.23 -0.3

Or see this region's nucleotide sequence