Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00158 and MIT1002_00159 overlap by 4 nucleotides MIT1002_00159 and MIT1002_00160 are separated by 35 nucleotides MIT1002_00160 and MIT1002_00161 overlap by 1 nucleotides MIT1002_00161 and MIT1002_00162 are separated by 12 nucleotides
MIT1002_00158: MIT1002_00158 - hypothetical protein, at 174,966 to 175,661
_00158
MIT1002_00159: MIT1002_00159 - Diaminopimelate epimerase, at 175,658 to 176,488
_00159
MIT1002_00160: MIT1002_00160 - Diaminopimelate decarboxylase, at 176,524 to 177,774
_00160
MIT1002_00161: MIT1002_00161 - putative small periplasmic lipoprotein, at 177,774 to 178,010
_00161
MIT1002_00162: MIT1002_00162 - putative glycosyl transferase, at 178,023 to 179,090
_00162
Position (kb) 176
177
178 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 175.536 kb on + strand, within MIT1002_00158 at 175.580 kb on + strand, within MIT1002_00158 at 175.588 kb on - strand, within MIT1002_00158 at 175.598 kb on - strand at 175.633 kb on + strand at 175.633 kb on + strand at 175.633 kb on + strand at 175.633 kb on + strand at 175.633 kb on + strand at 175.633 kb on + strand at 175.641 kb on - strand at 175.641 kb on - strand at 175.641 kb on - strand at 175.641 kb on - strand at 175.641 kb on - strand at 175.641 kb on - strand at 175.641 kb on - strand at 175.641 kb on - strand at 175.641 kb on - strand at 175.641 kb on - strand at 176.505 kb on - strand at 176.541 kb on + strand at 176.687 kb on - strand, within MIT1002_00160 at 176.746 kb on - strand, within MIT1002_00160 at 176.837 kb on - strand, within MIT1002_00160 at 176.856 kb on - strand, within MIT1002_00160 at 176.925 kb on - strand, within MIT1002_00160 at 177.001 kb on + strand, within MIT1002_00160 at 177.014 kb on - strand, within MIT1002_00160 at 177.048 kb on - strand, within MIT1002_00160 at 177.053 kb on - strand, within MIT1002_00160 at 177.069 kb on + strand, within MIT1002_00160 at 177.174 kb on + strand, within MIT1002_00160 at 177.192 kb on - strand, within MIT1002_00160 at 177.199 kb on + strand, within MIT1002_00160 at 177.487 kb on - strand, within MIT1002_00160 at 177.800 kb on - strand, within MIT1002_00161 at 177.803 kb on - strand, within MIT1002_00161 at 177.808 kb on + strand, within MIT1002_00161 at 177.816 kb on - strand, within MIT1002_00161 at 177.829 kb on + strand, within MIT1002_00161 at 177.876 kb on - strand, within MIT1002_00161 at 178.097 kb on + strand at 178.105 kb on - strand at 178.105 kb on - strand at 178.197 kb on + strand, within MIT1002_00162 at 178.197 kb on + strand, within MIT1002_00162 at 178.205 kb on - strand, within MIT1002_00162 at 178.205 kb on - strand, within MIT1002_00162 at 178.298 kb on - strand, within MIT1002_00162 at 178.320 kb on - strand, within MIT1002_00162 at 178.351 kb on - strand, within MIT1002_00162 at 178.380 kb on + strand, within MIT1002_00162 at 178.380 kb on + strand, within MIT1002_00162 at 178.380 kb on + strand, within MIT1002_00162 at 178.380 kb on + strand, within MIT1002_00162 at 178.460 kb on + strand, within MIT1002_00162 at 178.521 kb on - strand, within MIT1002_00162 at 178.607 kb on + strand, within MIT1002_00162 at 178.623 kb on + strand, within MIT1002_00162 at 178.648 kb on + strand, within MIT1002_00162 at 178.701 kb on - strand, within MIT1002_00162 at 178.763 kb on - strand, within MIT1002_00162
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 175,536 + MIT1002_00158 0.82 -1.0 175,580 + MIT1002_00158 0.88 -1.0 175,588 - MIT1002_00158 0.89 -1.5 175,598 - +1.3 175,633 + +1.3 175,633 + -0.2 175,633 + +0.9 175,633 + +1.1 175,633 + +1.4 175,633 + +0.8 175,641 - -0.8 175,641 - +1.6 175,641 - +0.6 175,641 - -0.2 175,641 - -2.1 175,641 - -1.5 175,641 - -0.6 175,641 - -3.2 175,641 - -0.4 175,641 - +0.4 176,505 - -1.1 176,541 + -6.8 176,687 - MIT1002_00160 0.13 -0.4 176,746 - MIT1002_00160 0.18 -1.7 176,837 - MIT1002_00160 0.25 -1.2 176,856 - MIT1002_00160 0.27 -0.8 176,925 - MIT1002_00160 0.32 -1.5 177,001 + MIT1002_00160 0.38 -2.0 177,014 - MIT1002_00160 0.39 -0.5 177,048 - MIT1002_00160 0.42 -0.9 177,053 - MIT1002_00160 0.42 -1.7 177,069 + MIT1002_00160 0.44 -3.8 177,174 + MIT1002_00160 0.52 -2.2 177,192 - MIT1002_00160 0.53 -1.0 177,199 + MIT1002_00160 0.54 -2.1 177,487 - MIT1002_00160 0.77 -1.8 177,800 - MIT1002_00161 0.11 -2.1 177,803 - MIT1002_00161 0.12 -0.1 177,808 + MIT1002_00161 0.14 -2.5 177,816 - MIT1002_00161 0.18 -1.5 177,829 + MIT1002_00161 0.23 +0.1 177,876 - MIT1002_00161 0.43 -1.9 178,097 + -0.5 178,105 - -0.2 178,105 - +1.6 178,197 + MIT1002_00162 0.16 -2.1 178,197 + MIT1002_00162 0.16 +2.0 178,205 - MIT1002_00162 0.17 +0.4 178,205 - MIT1002_00162 0.17 +1.4 178,298 - MIT1002_00162 0.26 +0.2 178,320 - MIT1002_00162 0.28 -0.4 178,351 - MIT1002_00162 0.31 +0.8 178,380 + MIT1002_00162 0.33 +2.0 178,380 + MIT1002_00162 0.33 -0.3 178,380 + MIT1002_00162 0.33 +0.1 178,380 + MIT1002_00162 0.33 +0.2 178,460 + MIT1002_00162 0.41 +0.7 178,521 - MIT1002_00162 0.47 -0.2 178,607 + MIT1002_00162 0.55 +1.3 178,623 + MIT1002_00162 0.56 +0.5 178,648 + MIT1002_00162 0.59 -1.2 178,701 - MIT1002_00162 0.63 +0.7 178,763 - MIT1002_00162 0.69 -0.5
Or see this region's nucleotide sequence