Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00158

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00156 and MIT1002_00157 are separated by 20 nucleotidesMIT1002_00157 and MIT1002_00158 are separated by 5 nucleotidesMIT1002_00158 and MIT1002_00159 overlap by 4 nucleotidesMIT1002_00159 and MIT1002_00160 are separated by 35 nucleotides MIT1002_00156: MIT1002_00156 - Flavin mononucleotide phosphatase YigB, at 173,279 to 174,019 _00156 MIT1002_00157: MIT1002_00157 - Tyrosine recombinase XerC, at 174,040 to 174,960 _00157 MIT1002_00158: MIT1002_00158 - hypothetical protein, at 174,966 to 175,661 _00158 MIT1002_00159: MIT1002_00159 - Diaminopimelate epimerase, at 175,658 to 176,488 _00159 MIT1002_00160: MIT1002_00160 - Diaminopimelate decarboxylase, at 176,524 to 177,774 _00160 Position (kb) 174 175 176Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2 3at 173.968 kb on - strandat 173.971 kb on + strandat 173.971 kb on + strandat 173.972 kb on + strandat 173.973 kb on - strandat 173.986 kb on - strandat 174.002 kb on - strandat 174.043 kb on + strandat 174.060 kb on + strandat 174.106 kb on + strandat 174.106 kb on + strandat 174.106 kb on + strandat 174.106 kb on + strandat 174.107 kb on + strandat 174.107 kb on + strandat 174.114 kb on - strandat 174.114 kb on - strandat 174.115 kb on - strandat 174.140 kb on + strand, within MIT1002_00157at 174.156 kb on - strand, within MIT1002_00157at 174.349 kb on + strand, within MIT1002_00157at 174.425 kb on + strand, within MIT1002_00157at 174.433 kb on - strand, within MIT1002_00157at 174.447 kb on + strand, within MIT1002_00157at 174.447 kb on + strand, within MIT1002_00157at 174.453 kb on - strand, within MIT1002_00157at 174.455 kb on - strand, within MIT1002_00157at 174.495 kb on + strand, within MIT1002_00157at 174.495 kb on + strand, within MIT1002_00157at 174.502 kb on + strand, within MIT1002_00157at 174.503 kb on - strand, within MIT1002_00157at 174.503 kb on - strand, within MIT1002_00157at 174.528 kb on + strand, within MIT1002_00157at 174.553 kb on - strand, within MIT1002_00157at 174.587 kb on - strand, within MIT1002_00157at 174.672 kb on - strand, within MIT1002_00157at 174.712 kb on - strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.728 kb on + strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.793 kb on + strand, within MIT1002_00157at 174.805 kb on - strand, within MIT1002_00157at 174.824 kb on - strand, within MIT1002_00157at 174.865 kb on + strand, within MIT1002_00157at 174.891 kb on + strandat 174.892 kb on - strandat 174.892 kb on - strandat 174.927 kb on + strandat 174.956 kb on - strandat 175.088 kb on + strand, within MIT1002_00158at 175.095 kb on + strand, within MIT1002_00158at 175.103 kb on - strand, within MIT1002_00158at 175.115 kb on + strand, within MIT1002_00158at 175.127 kb on + strand, within MIT1002_00158at 175.127 kb on + strand, within MIT1002_00158at 175.325 kb on - strand, within MIT1002_00158at 175.325 kb on - strand, within MIT1002_00158at 175.325 kb on - strand, within MIT1002_00158at 175.334 kb on + strand, within MIT1002_00158at 175.342 kb on - strand, within MIT1002_00158at 175.344 kb on + strand, within MIT1002_00158at 175.413 kb on - strand, within MIT1002_00158at 175.536 kb on + strand, within MIT1002_00158at 175.580 kb on + strand, within MIT1002_00158at 175.588 kb on - strand, within MIT1002_00158at 175.598 kb on - strandat 175.633 kb on + strandat 175.633 kb on + strandat 175.633 kb on + strandat 175.633 kb on + strandat 175.633 kb on + strandat 175.633 kb on + strandat 175.641 kb on - strandat 175.641 kb on - strandat 175.641 kb on - strandat 175.641 kb on - strandat 175.641 kb on - strandat 175.641 kb on - strandat 175.641 kb on - strandat 175.641 kb on - strandat 175.641 kb on - strandat 175.641 kb on - strandat 176.505 kb on - strandat 176.541 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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173,968 - -0.8
173,971 + -0.9
173,971 + +0.3
173,972 + +0.3
173,973 - +1.0
173,986 - -0.8
174,002 - -2.5
174,043 + +1.0
174,060 + +2.4
174,106 + -2.1
174,106 + -1.1
174,106 + +3.4
174,106 + -0.6
174,107 + -0.7
174,107 + +1.3
174,114 - -1.1
174,114 - -0.7
174,115 - +1.7
174,140 + MIT1002_00157 0.11 +0.9
174,156 - MIT1002_00157 0.13 +0.5
174,349 + MIT1002_00157 0.34 -2.4
174,425 + MIT1002_00157 0.42 +0.3
174,433 - MIT1002_00157 0.43 -1.5
174,447 + MIT1002_00157 0.44 -0.3
174,447 + MIT1002_00157 0.44 +2.3
174,453 - MIT1002_00157 0.45 +0.6
174,455 - MIT1002_00157 0.45 -0.8
174,495 + MIT1002_00157 0.49 -1.8
174,495 + MIT1002_00157 0.49 -0.3
174,502 + MIT1002_00157 0.50 -2.5
174,503 - MIT1002_00157 0.50 +0.6
174,503 - MIT1002_00157 0.50 -0.6
174,528 + MIT1002_00157 0.53 +0.9
174,553 - MIT1002_00157 0.56 -0.1
174,587 - MIT1002_00157 0.59 -0.8
174,672 - MIT1002_00157 0.69 -0.8
174,712 - MIT1002_00157 0.73 -0.1
174,726 + MIT1002_00157 0.74 -0.0
174,726 + MIT1002_00157 0.74 -0.3
174,726 + MIT1002_00157 0.74 +1.0
174,726 + MIT1002_00157 0.74 -1.4
174,726 + MIT1002_00157 0.74 -0.7
174,726 + MIT1002_00157 0.74 -0.5
174,726 + MIT1002_00157 0.74 +1.0
174,726 + MIT1002_00157 0.74 +0.1
174,726 + MIT1002_00157 0.74 +2.2
174,726 + MIT1002_00157 0.74 -0.5
174,726 + MIT1002_00157 0.74 -0.2
174,728 + MIT1002_00157 0.75 -0.3
174,734 - MIT1002_00157 0.75 -0.3
174,734 - MIT1002_00157 0.75 -0.1
174,734 - MIT1002_00157 0.75 -1.4
174,734 - MIT1002_00157 0.75 +0.2
174,734 - MIT1002_00157 0.75 -0.4
174,734 - MIT1002_00157 0.75 -1.7
174,734 - MIT1002_00157 0.75 -0.6
174,734 - MIT1002_00157 0.75 +0.2
174,793 + MIT1002_00157 0.82 -0.8
174,805 - MIT1002_00157 0.83 +1.7
174,824 - MIT1002_00157 0.85 +0.5
174,865 + MIT1002_00157 0.90 -1.4
174,891 + -0.8
174,892 - +1.3
174,892 - -1.8
174,927 + -0.7
174,956 - +0.0
175,088 + MIT1002_00158 0.18 +0.1
175,095 + MIT1002_00158 0.19 -0.9
175,103 - MIT1002_00158 0.20 -0.8
175,115 + MIT1002_00158 0.21 -0.9
175,127 + MIT1002_00158 0.23 -0.9
175,127 + MIT1002_00158 0.23 -0.4
175,325 - MIT1002_00158 0.52 -0.7
175,325 - MIT1002_00158 0.52 -0.1
175,325 - MIT1002_00158 0.52 +0.4
175,334 + MIT1002_00158 0.53 +1.6
175,342 - MIT1002_00158 0.54 +0.6
175,344 + MIT1002_00158 0.54 -1.4
175,413 - MIT1002_00158 0.64 -2.5
175,536 + MIT1002_00158 0.82 -1.0
175,580 + MIT1002_00158 0.88 -1.0
175,588 - MIT1002_00158 0.89 -1.5
175,598 - +1.3
175,633 + +1.3
175,633 + -0.2
175,633 + +0.9
175,633 + +1.1
175,633 + +1.4
175,633 + +0.8
175,641 - -0.8
175,641 - +1.6
175,641 - +0.6
175,641 - -0.2
175,641 - -2.1
175,641 - -1.5
175,641 - -0.6
175,641 - -3.2
175,641 - -0.4
175,641 - +0.4
176,505 - -1.1
176,541 + -6.8

Or see this region's nucleotide sequence