Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00154

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00153 and MIT1002_00154 are separated by 463 nucleotidesMIT1002_00154 and MIT1002_00155 overlap by 8 nucleotides MIT1002_00153: MIT1002_00153 - DNA helicase II, at 168,162 to 170,333 _00153 MIT1002_00154: MIT1002_00154 - Serine acetyltransferase, at 170,797 to 171,609 _00154 MIT1002_00155: MIT1002_00155 - Diguanylate cyclase DosC, at 171,602 to 173,110 _00155 Position (kb) 170 171 172Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 169.875 kb on - strand, within MIT1002_00153at 169.877 kb on - strand, within MIT1002_00153at 169.929 kb on - strand, within MIT1002_00153at 169.948 kb on - strand, within MIT1002_00153at 170.087 kb on - strand, within MIT1002_00153at 170.116 kb on - strandat 170.154 kb on - strandat 170.209 kb on - strandat 170.226 kb on + strandat 170.284 kb on + strandat 170.326 kb on - strandat 170.335 kb on - strandat 170.343 kb on - strandat 170.357 kb on + strandat 170.365 kb on - strandat 170.367 kb on - strandat 170.400 kb on + strandat 170.400 kb on + strandat 170.493 kb on + strandat 170.502 kb on + strandat 170.510 kb on - strandat 170.536 kb on + strandat 170.544 kb on - strandat 170.574 kb on + strandat 170.600 kb on - strandat 170.717 kb on - strandat 170.793 kb on + strandat 170.894 kb on + strand, within MIT1002_00154at 170.919 kb on - strand, within MIT1002_00154at 170.936 kb on + strand, within MIT1002_00154at 170.944 kb on - strand, within MIT1002_00154at 171.033 kb on - strand, within MIT1002_00154at 171.133 kb on + strand, within MIT1002_00154at 171.138 kb on - strand, within MIT1002_00154at 171.139 kb on - strand, within MIT1002_00154at 171.281 kb on + strand, within MIT1002_00154at 171.299 kb on + strand, within MIT1002_00154at 171.315 kb on - strand, within MIT1002_00154at 171.335 kb on + strand, within MIT1002_00154at 171.343 kb on - strand, within MIT1002_00154at 171.371 kb on + strand, within MIT1002_00154at 171.449 kb on + strand, within MIT1002_00154at 171.470 kb on + strand, within MIT1002_00154at 171.475 kb on + strand, within MIT1002_00154at 171.618 kb on - strandat 171.667 kb on + strandat 171.667 kb on + strandat 171.675 kb on - strandat 171.684 kb on + strandat 171.697 kb on + strandat 171.697 kb on + strandat 171.697 kb on + strandat 171.697 kb on + strandat 171.705 kb on - strandat 171.705 kb on - strandat 171.705 kb on - strandat 171.705 kb on - strandat 171.818 kb on - strand, within MIT1002_00155at 171.876 kb on - strand, within MIT1002_00155at 171.911 kb on + strand, within MIT1002_00155at 172.006 kb on - strand, within MIT1002_00155at 172.035 kb on - strand, within MIT1002_00155at 172.035 kb on - strand, within MIT1002_00155at 172.035 kb on - strand, within MIT1002_00155at 172.051 kb on - strand, within MIT1002_00155at 172.054 kb on + strand, within MIT1002_00155at 172.054 kb on + strand, within MIT1002_00155at 172.062 kb on - strand, within MIT1002_00155at 172.092 kb on + strand, within MIT1002_00155at 172.100 kb on - strand, within MIT1002_00155at 172.101 kb on + strand, within MIT1002_00155at 172.148 kb on + strand, within MIT1002_00155at 172.156 kb on + strand, within MIT1002_00155at 172.169 kb on - strand, within MIT1002_00155at 172.171 kb on - strand, within MIT1002_00155at 172.196 kb on + strand, within MIT1002_00155at 172.238 kb on + strand, within MIT1002_00155at 172.238 kb on + strand, within MIT1002_00155at 172.238 kb on + strand, within MIT1002_00155at 172.238 kb on + strand, within MIT1002_00155at 172.238 kb on + strand, within MIT1002_00155at 172.238 kb on + strand, within MIT1002_00155at 172.240 kb on + strand, within MIT1002_00155at 172.246 kb on - strand, within MIT1002_00155at 172.246 kb on - strand, within MIT1002_00155at 172.246 kb on - strand, within MIT1002_00155at 172.246 kb on - strand, within MIT1002_00155at 172.246 kb on - strand, within MIT1002_00155at 172.275 kb on + strand, within MIT1002_00155at 172.275 kb on + strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.285 kb on + strand, within MIT1002_00155at 172.285 kb on + strand, within MIT1002_00155at 172.293 kb on - strand, within MIT1002_00155at 172.335 kb on + strand, within MIT1002_00155at 172.338 kb on - strand, within MIT1002_00155at 172.364 kb on - strand, within MIT1002_00155at 172.366 kb on + strand, within MIT1002_00155at 172.486 kb on + strand, within MIT1002_00155at 172.496 kb on + strand, within MIT1002_00155at 172.498 kb on + strand, within MIT1002_00155at 172.506 kb on - strand, within MIT1002_00155at 172.506 kb on - strand, within MIT1002_00155at 172.507 kb on - strand, within MIT1002_00155

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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169,875 - MIT1002_00153 0.79 +0.4
169,877 - MIT1002_00153 0.79 -0.1
169,929 - MIT1002_00153 0.81 +1.7
169,948 - MIT1002_00153 0.82 +0.2
170,087 - MIT1002_00153 0.89 +1.3
170,116 - -0.5
170,154 - +0.1
170,209 - +0.1
170,226 + +1.3
170,284 + -0.2
170,326 - -0.7
170,335 - +1.4
170,343 - -0.5
170,357 + -0.2
170,365 - +0.4
170,367 - -0.0
170,400 + -1.4
170,400 + -0.2
170,493 + -1.2
170,502 + -1.4
170,510 - -3.5
170,536 + +0.4
170,544 - +1.0
170,574 + -1.5
170,600 - +0.4
170,717 - -3.1
170,793 + -0.7
170,894 + MIT1002_00154 0.12 -2.7
170,919 - MIT1002_00154 0.15 -1.1
170,936 + MIT1002_00154 0.17 -0.8
170,944 - MIT1002_00154 0.18 -1.7
171,033 - MIT1002_00154 0.29 -3.0
171,133 + MIT1002_00154 0.41 -5.5
171,138 - MIT1002_00154 0.42 +0.0
171,139 - MIT1002_00154 0.42 -3.2
171,281 + MIT1002_00154 0.60 -2.3
171,299 + MIT1002_00154 0.62 -1.7
171,315 - MIT1002_00154 0.64 -0.5
171,335 + MIT1002_00154 0.66 -2.9
171,343 - MIT1002_00154 0.67 +1.6
171,371 + MIT1002_00154 0.71 -0.7
171,449 + MIT1002_00154 0.80 -2.0
171,470 + MIT1002_00154 0.83 -2.1
171,475 + MIT1002_00154 0.83 -3.2
171,618 - -1.1
171,667 + +0.8
171,667 + -0.5
171,675 - -0.5
171,684 + +0.3
171,697 + +0.9
171,697 + -0.3
171,697 + -0.4
171,697 + +2.2
171,705 - +0.4
171,705 - -0.7
171,705 - +1.1
171,705 - +1.5
171,818 - MIT1002_00155 0.14 -0.3
171,876 - MIT1002_00155 0.18 +1.3
171,911 + MIT1002_00155 0.20 +0.9
172,006 - MIT1002_00155 0.27 +0.0
172,035 - MIT1002_00155 0.29 -0.5
172,035 - MIT1002_00155 0.29 +0.0
172,035 - MIT1002_00155 0.29 +1.6
172,051 - MIT1002_00155 0.30 +2.3
172,054 + MIT1002_00155 0.30 +0.5
172,054 + MIT1002_00155 0.30 -0.9
172,062 - MIT1002_00155 0.30 -2.3
172,092 + MIT1002_00155 0.32 +0.8
172,100 - MIT1002_00155 0.33 +1.1
172,101 + MIT1002_00155 0.33 -0.6
172,148 + MIT1002_00155 0.36 +0.2
172,156 + MIT1002_00155 0.37 +0.5
172,169 - MIT1002_00155 0.38 -0.3
172,171 - MIT1002_00155 0.38 -2.4
172,196 + MIT1002_00155 0.39 +0.5
172,238 + MIT1002_00155 0.42 +0.7
172,238 + MIT1002_00155 0.42 -1.2
172,238 + MIT1002_00155 0.42 +0.1
172,238 + MIT1002_00155 0.42 -0.5
172,238 + MIT1002_00155 0.42 +0.6
172,238 + MIT1002_00155 0.42 -0.3
172,240 + MIT1002_00155 0.42 -2.2
172,246 - MIT1002_00155 0.43 -0.3
172,246 - MIT1002_00155 0.43 +0.3
172,246 - MIT1002_00155 0.43 -1.3
172,246 - MIT1002_00155 0.43 +0.6
172,246 - MIT1002_00155 0.43 +0.3
172,275 + MIT1002_00155 0.45 +1.4
172,275 + MIT1002_00155 0.45 -0.9
172,283 - MIT1002_00155 0.45 +0.0
172,283 - MIT1002_00155 0.45 -1.4
172,283 - MIT1002_00155 0.45 +1.9
172,283 - MIT1002_00155 0.45 -0.6
172,283 - MIT1002_00155 0.45 -2.1
172,283 - MIT1002_00155 0.45 +0.5
172,283 - MIT1002_00155 0.45 -0.5
172,283 - MIT1002_00155 0.45 +0.8
172,283 - MIT1002_00155 0.45 +0.1
172,283 - MIT1002_00155 0.45 -0.2
172,285 + MIT1002_00155 0.45 +1.6
172,285 + MIT1002_00155 0.45 +1.8
172,293 - MIT1002_00155 0.46 -0.3
172,335 + MIT1002_00155 0.49 -1.4
172,338 - MIT1002_00155 0.49 +1.4
172,364 - MIT1002_00155 0.50 -0.6
172,366 + MIT1002_00155 0.51 +1.0
172,486 + MIT1002_00155 0.59 +1.3
172,496 + MIT1002_00155 0.59 -0.3
172,498 + MIT1002_00155 0.59 +1.3
172,506 - MIT1002_00155 0.60 -2.7
172,506 - MIT1002_00155 0.60 -1.2
172,507 - MIT1002_00155 0.60 -2.1

Or see this region's nucleotide sequence