Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00095

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00092 and MIT1002_00093 overlap by 4 nucleotidesMIT1002_00093 and MIT1002_00094 are separated by 1 nucleotidesMIT1002_00094 and MIT1002_00095 overlap by 4 nucleotidesMIT1002_00095 and MIT1002_00096 overlap by 8 nucleotides MIT1002_00092: MIT1002_00092 - 2-iminoacetate synthase, at 100,093 to 101,226 _00092 MIT1002_00093: MIT1002_00093 - Thiazole synthase, at 101,223 to 101,993 _00093 MIT1002_00094: MIT1002_00094 - sulfur carrier protein ThiS, at 101,995 to 102,204 _00094 MIT1002_00095: MIT1002_00095 - Molybdopterin-synthase adenylyltransferase, at 102,201 to 102,995 _00095 MIT1002_00096: MIT1002_00096 - Thiamine-phosphate synthase, at 102,988 to 104,589 _00096 Position (kb) 102 103Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 101.220 kb on + strandat 101.255 kb on + strandat 101.255 kb on + strandat 101.380 kb on + strand, within MIT1002_00093at 101.441 kb on - strand, within MIT1002_00093at 101.514 kb on + strand, within MIT1002_00093at 101.522 kb on - strand, within MIT1002_00093at 101.522 kb on - strand, within MIT1002_00093at 101.570 kb on + strand, within MIT1002_00093at 101.578 kb on - strand, within MIT1002_00093at 101.602 kb on - strand, within MIT1002_00093at 101.663 kb on + strand, within MIT1002_00093at 101.685 kb on + strand, within MIT1002_00093at 101.693 kb on - strand, within MIT1002_00093at 101.693 kb on - strand, within MIT1002_00093at 101.693 kb on - strand, within MIT1002_00093at 101.724 kb on + strand, within MIT1002_00093at 101.724 kb on + strand, within MIT1002_00093at 101.727 kb on - strand, within MIT1002_00093at 101.727 kb on - strand, within MIT1002_00093at 101.732 kb on - strand, within MIT1002_00093at 101.732 kb on - strand, within MIT1002_00093at 101.732 kb on - strand, within MIT1002_00093at 101.754 kb on + strand, within MIT1002_00093at 101.889 kb on + strand, within MIT1002_00093at 101.889 kb on + strand, within MIT1002_00093at 101.897 kb on - strand, within MIT1002_00093at 101.897 kb on - strand, within MIT1002_00093at 101.897 kb on - strand, within MIT1002_00093at 101.897 kb on - strand, within MIT1002_00093at 101.903 kb on + strand, within MIT1002_00093at 101.903 kb on + strand, within MIT1002_00093at 101.911 kb on - strand, within MIT1002_00093at 101.911 kb on - strand, within MIT1002_00093at 101.911 kb on - strand, within MIT1002_00093at 101.928 kb on - strandat 101.965 kb on - strandat 101.970 kb on + strandat 101.978 kb on - strandat 102.083 kb on - strand, within MIT1002_00094at 102.255 kb on + strandat 102.255 kb on + strandat 102.255 kb on + strandat 102.263 kb on + strandat 102.263 kb on - strandat 102.263 kb on - strandat 102.265 kb on + strandat 102.284 kb on + strand, within MIT1002_00095at 102.330 kb on + strand, within MIT1002_00095at 102.330 kb on + strand, within MIT1002_00095at 102.330 kb on + strand, within MIT1002_00095at 102.338 kb on - strand, within MIT1002_00095at 102.338 kb on - strand, within MIT1002_00095at 102.360 kb on + strand, within MIT1002_00095at 102.360 kb on + strand, within MIT1002_00095at 102.360 kb on + strand, within MIT1002_00095at 102.375 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.473 kb on - strand, within MIT1002_00095at 102.473 kb on - strand, within MIT1002_00095at 102.512 kb on + strand, within MIT1002_00095at 102.556 kb on + strand, within MIT1002_00095at 102.562 kb on - strand, within MIT1002_00095at 102.568 kb on + strand, within MIT1002_00095at 102.568 kb on + strand, within MIT1002_00095at 102.576 kb on - strand, within MIT1002_00095at 102.581 kb on - strand, within MIT1002_00095at 102.674 kb on + strand, within MIT1002_00095at 102.677 kb on - strand, within MIT1002_00095at 102.682 kb on - strand, within MIT1002_00095at 102.719 kb on + strand, within MIT1002_00095at 102.776 kb on + strand, within MIT1002_00095at 102.784 kb on - strand, within MIT1002_00095at 102.786 kb on + strand, within MIT1002_00095at 102.799 kb on - strand, within MIT1002_00095at 102.863 kb on - strand, within MIT1002_00095at 102.868 kb on + strand, within MIT1002_00095at 102.868 kb on + strand, within MIT1002_00095at 102.876 kb on - strand, within MIT1002_00095at 102.882 kb on + strand, within MIT1002_00095at 102.882 kb on + strand, within MIT1002_00095at 102.974 kb on - strandat 102.998 kb on - strandat 103.043 kb on - strandat 103.058 kb on - strandat 103.060 kb on + strandat 103.133 kb on + strandat 103.176 kb on + strand, within MIT1002_00096at 103.192 kb on + strand, within MIT1002_00096at 103.192 kb on - strand, within MIT1002_00096at 103.192 kb on - strand, within MIT1002_00096at 103.225 kb on + strand, within MIT1002_00096at 103.236 kb on + strand, within MIT1002_00096at 103.244 kb on - strand, within MIT1002_00096at 103.251 kb on + strand, within MIT1002_00096at 103.259 kb on - strand, within MIT1002_00096at 103.259 kb on - strand, within MIT1002_00096at 103.328 kb on + strand, within MIT1002_00096at 103.388 kb on + strand, within MIT1002_00096at 103.406 kb on - strand, within MIT1002_00096at 103.437 kb on + strand, within MIT1002_00096at 103.454 kb on - strand, within MIT1002_00096at 103.493 kb on + strand, within MIT1002_00096at 103.499 kb on + strand, within MIT1002_00096at 103.547 kb on - strand, within MIT1002_00096at 103.558 kb on + strand, within MIT1002_00096at 103.558 kb on + strand, within MIT1002_00096at 103.558 kb on + strand, within MIT1002_00096at 103.564 kb on - strand, within MIT1002_00096at 103.566 kb on - strand, within MIT1002_00096at 103.566 kb on - strand, within MIT1002_00096at 103.571 kb on - strand, within MIT1002_00096at 103.578 kb on - strand, within MIT1002_00096at 103.578 kb on - strand, within MIT1002_00096at 103.604 kb on - strand, within MIT1002_00096at 103.683 kb on + strand, within MIT1002_00096at 103.691 kb on - strand, within MIT1002_00096at 103.698 kb on + strand, within MIT1002_00096at 103.713 kb on - strand, within MIT1002_00096at 103.735 kb on - strand, within MIT1002_00096at 103.745 kb on - strand, within MIT1002_00096at 103.803 kb on + strand, within MIT1002_00096at 103.811 kb on - strand, within MIT1002_00096at 103.818 kb on - strand, within MIT1002_00096at 103.850 kb on - strand, within MIT1002_00096at 103.850 kb on - strand, within MIT1002_00096at 103.850 kb on - strand, within MIT1002_00096at 103.897 kb on + strand, within MIT1002_00096at 103.897 kb on + strand, within MIT1002_00096at 103.897 kb on + strand, within MIT1002_00096at 103.897 kb on + strand, within MIT1002_00096at 103.897 kb on + strand, within MIT1002_00096at 103.903 kb on + strand, within MIT1002_00096at 103.903 kb on + strand, within MIT1002_00096at 103.905 kb on - strand, within MIT1002_00096at 103.905 kb on - strand, within MIT1002_00096at 103.911 kb on - strand, within MIT1002_00096at 103.961 kb on - strand, within MIT1002_00096

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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101,220 + -2.3
101,255 + -3.2
101,255 + -2.0
101,380 + MIT1002_00093 0.20 -1.6
101,441 - MIT1002_00093 0.28 -0.6
101,514 + MIT1002_00093 0.38 -1.0
101,522 - MIT1002_00093 0.39 -1.8
101,522 - MIT1002_00093 0.39 -3.0
101,570 + MIT1002_00093 0.45 -0.8
101,578 - MIT1002_00093 0.46 -2.3
101,602 - MIT1002_00093 0.49 -2.2
101,663 + MIT1002_00093 0.57 -3.1
101,685 + MIT1002_00093 0.60 -2.5
101,693 - MIT1002_00093 0.61 +0.3
101,693 - MIT1002_00093 0.61 -3.3
101,693 - MIT1002_00093 0.61 -3.3
101,724 + MIT1002_00093 0.65 -1.7
101,724 + MIT1002_00093 0.65 -1.8
101,727 - MIT1002_00093 0.65 +0.1
101,727 - MIT1002_00093 0.65 +0.3
101,732 - MIT1002_00093 0.66 +1.0
101,732 - MIT1002_00093 0.66 -2.5
101,732 - MIT1002_00093 0.66 -1.5
101,754 + MIT1002_00093 0.69 -3.6
101,889 + MIT1002_00093 0.86 -0.7
101,889 + MIT1002_00093 0.86 -4.0
101,897 - MIT1002_00093 0.87 +1.0
101,897 - MIT1002_00093 0.87 -1.5
101,897 - MIT1002_00093 0.87 +0.3
101,897 - MIT1002_00093 0.87 -5.4
101,903 + MIT1002_00093 0.88 -1.3
101,903 + MIT1002_00093 0.88 -1.9
101,911 - MIT1002_00093 0.89 -2.9
101,911 - MIT1002_00093 0.89 -2.0
101,911 - MIT1002_00093 0.89 -4.2
101,928 - -2.4
101,965 - -2.7
101,970 + +1.6
101,978 - -2.9
102,083 - MIT1002_00094 0.42 -2.0
102,255 + -3.0
102,255 + -0.6
102,255 + -1.0
102,263 + -0.8
102,263 - -2.4
102,263 - -2.3
102,265 + +0.4
102,284 + MIT1002_00095 0.10 +1.6
102,330 + MIT1002_00095 0.16 -1.2
102,330 + MIT1002_00095 0.16 -2.6
102,330 + MIT1002_00095 0.16 -3.1
102,338 - MIT1002_00095 0.17 -1.6
102,338 - MIT1002_00095 0.17 +0.5
102,360 + MIT1002_00095 0.20 -1.0
102,360 + MIT1002_00095 0.20 -3.3
102,360 + MIT1002_00095 0.20 +1.0
102,375 + MIT1002_00095 0.22 -1.8
102,465 + MIT1002_00095 0.33 -2.1
102,465 + MIT1002_00095 0.33 -1.0
102,465 + MIT1002_00095 0.33 -2.3
102,465 + MIT1002_00095 0.33 -4.3
102,465 + MIT1002_00095 0.33 -1.5
102,473 - MIT1002_00095 0.34 -1.6
102,473 - MIT1002_00095 0.34 -3.7
102,512 + MIT1002_00095 0.39 -1.8
102,556 + MIT1002_00095 0.45 -1.5
102,562 - MIT1002_00095 0.45 -0.4
102,568 + MIT1002_00095 0.46 -1.9
102,568 + MIT1002_00095 0.46 -1.4
102,576 - MIT1002_00095 0.47 -1.4
102,581 - MIT1002_00095 0.48 -2.4
102,674 + MIT1002_00095 0.59 -1.1
102,677 - MIT1002_00095 0.60 -1.3
102,682 - MIT1002_00095 0.61 -0.4
102,719 + MIT1002_00095 0.65 +0.6
102,776 + MIT1002_00095 0.72 -2.6
102,784 - MIT1002_00095 0.73 -1.8
102,786 + MIT1002_00095 0.74 -3.7
102,799 - MIT1002_00095 0.75 -2.0
102,863 - MIT1002_00095 0.83 +0.3
102,868 + MIT1002_00095 0.84 -1.1
102,868 + MIT1002_00095 0.84 -1.9
102,876 - MIT1002_00095 0.85 -2.1
102,882 + MIT1002_00095 0.86 -0.5
102,882 + MIT1002_00095 0.86 -0.4
102,974 - -1.1
102,998 - -4.1
103,043 - +1.6
103,058 - -1.6
103,060 + -3.3
103,133 + -1.9
103,176 + MIT1002_00096 0.12 -2.9
103,192 + MIT1002_00096 0.13 -1.7
103,192 - MIT1002_00096 0.13 -1.8
103,192 - MIT1002_00096 0.13 +1.0
103,225 + MIT1002_00096 0.15 -3.7
103,236 + MIT1002_00096 0.15 -2.3
103,244 - MIT1002_00096 0.16 -2.5
103,251 + MIT1002_00096 0.16 -1.7
103,259 - MIT1002_00096 0.17 -2.2
103,259 - MIT1002_00096 0.17 -1.5
103,328 + MIT1002_00096 0.21 +1.3
103,388 + MIT1002_00096 0.25 -3.3
103,406 - MIT1002_00096 0.26 -0.3
103,437 + MIT1002_00096 0.28 -5.2
103,454 - MIT1002_00096 0.29 +0.0
103,493 + MIT1002_00096 0.32 -2.1
103,499 + MIT1002_00096 0.32 -1.7
103,547 - MIT1002_00096 0.35 -0.6
103,558 + MIT1002_00096 0.36 -2.4
103,558 + MIT1002_00096 0.36 -2.5
103,558 + MIT1002_00096 0.36 -1.7
103,564 - MIT1002_00096 0.36 -3.7
103,566 - MIT1002_00096 0.36 -1.7
103,566 - MIT1002_00096 0.36 -1.5
103,571 - MIT1002_00096 0.36 -2.0
103,578 - MIT1002_00096 0.37 +0.6
103,578 - MIT1002_00096 0.37 +0.3
103,604 - MIT1002_00096 0.38 -1.1
103,683 + MIT1002_00096 0.43 -4.2
103,691 - MIT1002_00096 0.44 -0.9
103,698 + MIT1002_00096 0.44 +0.3
103,713 - MIT1002_00096 0.45 -2.0
103,735 - MIT1002_00096 0.47 -1.6
103,745 - MIT1002_00096 0.47 -4.2
103,803 + MIT1002_00096 0.51 -2.8
103,811 - MIT1002_00096 0.51 -2.8
103,818 - MIT1002_00096 0.52 -2.4
103,850 - MIT1002_00096 0.54 +0.8
103,850 - MIT1002_00096 0.54 -2.3
103,850 - MIT1002_00096 0.54 -1.5
103,897 + MIT1002_00096 0.57 -2.0
103,897 + MIT1002_00096 0.57 -2.3
103,897 + MIT1002_00096 0.57 -0.3
103,897 + MIT1002_00096 0.57 -2.8
103,897 + MIT1002_00096 0.57 -2.7
103,903 + MIT1002_00096 0.57 -2.4
103,903 + MIT1002_00096 0.57 -1.1
103,905 - MIT1002_00096 0.57 +1.6
103,905 - MIT1002_00096 0.57 -2.4
103,911 - MIT1002_00096 0.58 +1.3
103,961 - MIT1002_00096 0.61 -1.9

Or see this region's nucleotide sequence