Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00070

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00068 and MIT1002_00069 overlap by 4 nucleotidesMIT1002_00069 and MIT1002_00070 are separated by 101 nucleotidesMIT1002_00070 and MIT1002_00071 are separated by 112 nucleotides MIT1002_00068: MIT1002_00068 - Chorismate--pyruvate lyase, at 72,960 to 73,574 _00068 MIT1002_00069: MIT1002_00069 - 4-hydroxybenzoate octaprenyltransferase, at 73,571 to 74,428 _00069 MIT1002_00070: MIT1002_00070 - Membrane fusogenic activity, at 74,530 to 74,781 _00070 MIT1002_00071: MIT1002_00071 - ATP-dependent DNA helicase rep, at 74,894 to 76,909 _00071 Position (kb) 74 75Strain fitness (log2 ratio) -1 0 1at 74.498 kb on - strandat 74.527 kb on - strandat 74.557 kb on - strand, within MIT1002_00070

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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74,498 - -0.4
74,527 - -0.9
74,557 - MIT1002_00070 0.11 -1.5

Or see this region's nucleotide sequence