Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00043

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00041 and MIT1002_00042 are separated by 2 nucleotidesMIT1002_00042 and MIT1002_00043 are separated by 247 nucleotidesMIT1002_00043 and MIT1002_00044 are separated by 2 nucleotides MIT1002_00041: MIT1002_00041 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 46,390 to 47,874 _00041 MIT1002_00042: MIT1002_00042 - SOS cell division inhibitor, at 47,877 to 48,626 _00042 MIT1002_00043: MIT1002_00043 - hypothetical protein, at 48,874 to 49,383 _00043 MIT1002_00044: MIT1002_00044 - hypothetical protein, at 49,386 to 51,137 _00044 Position (kb) 48 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 48.025 kb on + strand, within MIT1002_00042at 48.031 kb on + strand, within MIT1002_00042at 48.032 kb on + strand, within MIT1002_00042at 48.038 kb on - strand, within MIT1002_00042at 48.039 kb on - strand, within MIT1002_00042at 48.063 kb on + strand, within MIT1002_00042at 48.071 kb on - strand, within MIT1002_00042at 48.073 kb on - strand, within MIT1002_00042at 48.115 kb on - strand, within MIT1002_00042at 48.157 kb on + strand, within MIT1002_00042at 48.157 kb on + strand, within MIT1002_00042at 48.157 kb on + strand, within MIT1002_00042at 48.157 kb on + strand, within MIT1002_00042at 48.183 kb on + strand, within MIT1002_00042at 48.232 kb on + strand, within MIT1002_00042at 48.238 kb on + strand, within MIT1002_00042at 48.240 kb on + strand, within MIT1002_00042at 48.246 kb on - strand, within MIT1002_00042at 48.248 kb on - strand, within MIT1002_00042at 48.248 kb on - strand, within MIT1002_00042at 48.253 kb on - strand, within MIT1002_00042at 48.253 kb on - strand, within MIT1002_00042at 48.297 kb on - strand, within MIT1002_00042at 48.341 kb on + strand, within MIT1002_00042at 48.382 kb on - strand, within MIT1002_00042at 48.415 kb on - strand, within MIT1002_00042at 48.485 kb on - strand, within MIT1002_00042at 48.571 kb on + strandat 48.665 kb on - strandat 48.670 kb on + strandat 48.678 kb on - strandat 48.679 kb on - strandat 48.787 kb on - strandat 48.793 kb on - strandat 48.811 kb on + strandat 48.823 kb on + strandat 48.831 kb on - strandat 48.838 kb on - strandat 48.848 kb on - strandat 48.905 kb on + strandat 48.979 kb on + strand, within MIT1002_00043at 49.012 kb on - strand, within MIT1002_00043at 49.063 kb on - strand, within MIT1002_00043at 49.142 kb on + strand, within MIT1002_00043at 49.238 kb on - strand, within MIT1002_00043at 49.270 kb on - strand, within MIT1002_00043at 49.351 kb on + strandat 49.365 kb on + strandat 49.391 kb on - strandat 49.445 kb on + strandat 49.477 kb on + strandat 49.487 kb on + strandat 49.487 kb on + strandat 49.487 kb on + strandat 49.495 kb on - strandat 49.566 kb on + strand, within MIT1002_00044at 49.566 kb on + strand, within MIT1002_00044at 49.566 kb on + strand, within MIT1002_00044at 49.568 kb on - strand, within MIT1002_00044at 49.574 kb on - strand, within MIT1002_00044at 49.665 kb on + strand, within MIT1002_00044at 49.665 kb on + strand, within MIT1002_00044at 49.700 kb on - strand, within MIT1002_00044at 49.735 kb on + strand, within MIT1002_00044at 49.794 kb on + strand, within MIT1002_00044at 49.794 kb on + strand, within MIT1002_00044at 49.802 kb on - strand, within MIT1002_00044at 49.809 kb on - strand, within MIT1002_00044at 49.896 kb on + strand, within MIT1002_00044at 49.898 kb on + strand, within MIT1002_00044at 49.903 kb on + strand, within MIT1002_00044at 49.928 kb on - strand, within MIT1002_00044at 50.007 kb on - strand, within MIT1002_00044at 50.048 kb on - strand, within MIT1002_00044at 50.051 kb on + strand, within MIT1002_00044at 50.066 kb on - strand, within MIT1002_00044at 50.317 kb on + strand, within MIT1002_00044at 50.317 kb on + strand, within MIT1002_00044at 50.325 kb on - strand, within MIT1002_00044at 50.338 kb on + strand, within MIT1002_00044at 50.340 kb on - strand, within MIT1002_00044at 50.367 kb on - strand, within MIT1002_00044

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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48,025 + MIT1002_00042 0.20 +0.1
48,031 + MIT1002_00042 0.21 +0.6
48,032 + MIT1002_00042 0.21 -0.1
48,038 - MIT1002_00042 0.21 -0.4
48,039 - MIT1002_00042 0.22 -0.7
48,063 + MIT1002_00042 0.25 +0.3
48,071 - MIT1002_00042 0.26 -0.9
48,073 - MIT1002_00042 0.26 +1.3
48,115 - MIT1002_00042 0.32 +0.6
48,157 + MIT1002_00042 0.37 +0.6
48,157 + MIT1002_00042 0.37 -0.0
48,157 + MIT1002_00042 0.37 +1.0
48,157 + MIT1002_00042 0.37 +0.4
48,183 + MIT1002_00042 0.41 -0.5
48,232 + MIT1002_00042 0.47 -1.6
48,238 + MIT1002_00042 0.48 -0.6
48,240 + MIT1002_00042 0.48 +0.2
48,246 - MIT1002_00042 0.49 -0.1
48,248 - MIT1002_00042 0.49 +0.4
48,248 - MIT1002_00042 0.49 -0.1
48,253 - MIT1002_00042 0.50 -0.6
48,253 - MIT1002_00042 0.50 +3.0
48,297 - MIT1002_00042 0.56 -0.2
48,341 + MIT1002_00042 0.62 -1.3
48,382 - MIT1002_00042 0.67 +0.3
48,415 - MIT1002_00042 0.72 -0.1
48,485 - MIT1002_00042 0.81 -0.8
48,571 + +0.7
48,665 - +0.1
48,670 + -0.8
48,678 - +2.5
48,679 - +0.6
48,787 - -0.3
48,793 - -0.8
48,811 + +1.0
48,823 + -0.6
48,831 - +2.7
48,838 - -0.5
48,848 - +0.2
48,905 + +0.7
48,979 + MIT1002_00043 0.21 +0.9
49,012 - MIT1002_00043 0.27 +0.3
49,063 - MIT1002_00043 0.37 +1.4
49,142 + MIT1002_00043 0.53 +0.6
49,238 - MIT1002_00043 0.71 -0.9
49,270 - MIT1002_00043 0.78 -1.4
49,351 + -0.2
49,365 + -2.9
49,391 - +2.8
49,445 + -1.5
49,477 + -1.2
49,487 + +1.1
49,487 + +2.6
49,487 + +0.3
49,495 - +0.6
49,566 + MIT1002_00044 0.10 -1.5
49,566 + MIT1002_00044 0.10 +1.3
49,566 + MIT1002_00044 0.10 -0.8
49,568 - MIT1002_00044 0.10 -0.6
49,574 - MIT1002_00044 0.11 +1.9
49,665 + MIT1002_00044 0.16 -0.4
49,665 + MIT1002_00044 0.16 +0.4
49,700 - MIT1002_00044 0.18 +1.0
49,735 + MIT1002_00044 0.20 +0.4
49,794 + MIT1002_00044 0.23 +0.0
49,794 + MIT1002_00044 0.23 -0.8
49,802 - MIT1002_00044 0.24 +0.2
49,809 - MIT1002_00044 0.24 +0.4
49,896 + MIT1002_00044 0.29 +1.0
49,898 + MIT1002_00044 0.29 +0.7
49,903 + MIT1002_00044 0.30 -0.2
49,928 - MIT1002_00044 0.31 +0.2
50,007 - MIT1002_00044 0.35 +0.4
50,048 - MIT1002_00044 0.38 +0.4
50,051 + MIT1002_00044 0.38 +0.3
50,066 - MIT1002_00044 0.39 -0.8
50,317 + MIT1002_00044 0.53 -0.2
50,317 + MIT1002_00044 0.53 +0.7
50,325 - MIT1002_00044 0.54 +0.8
50,338 + MIT1002_00044 0.54 +1.5
50,340 - MIT1002_00044 0.54 -1.5
50,367 - MIT1002_00044 0.56 -1.4

Or see this region's nucleotide sequence