Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04216

Experiment: monoculture; Experiment C, time point 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_04215 and MIT1002_04216 are separated by 177 nucleotidesMIT1002_04216 and MIT1002_04217 overlap by 1 nucleotides MIT1002_04215: MIT1002_04215 - Bacteriophytochrome cph2, at 83,615 to 84,757 _04215 MIT1002_04216: MIT1002_04216 - CheW-like domain protein, at 84,935 to 85,450 _04216 MIT1002_04217: MIT1002_04217 - Chemotaxis protein methyltransferase, at 85,450 to 86,547 _04217 Position (kb) 84 85 86Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 83.941 kb on + strand, within MIT1002_04215at 83.941 kb on + strand, within MIT1002_04215at 83.949 kb on + strand, within MIT1002_04215at 83.949 kb on - strand, within MIT1002_04215at 83.949 kb on - strand, within MIT1002_04215at 83.949 kb on - strand, within MIT1002_04215at 83.950 kb on - strand, within MIT1002_04215at 83.957 kb on - strand, within MIT1002_04215at 83.958 kb on - strand, within MIT1002_04215at 83.963 kb on - strand, within MIT1002_04215at 83.963 kb on - strand, within MIT1002_04215at 83.982 kb on + strand, within MIT1002_04215at 84.070 kb on + strand, within MIT1002_04215at 84.128 kb on + strand, within MIT1002_04215at 84.164 kb on + strand, within MIT1002_04215at 84.251 kb on + strand, within MIT1002_04215at 84.380 kb on + strand, within MIT1002_04215at 84.388 kb on - strand, within MIT1002_04215at 84.419 kb on - strand, within MIT1002_04215at 84.419 kb on - strand, within MIT1002_04215at 84.435 kb on + strand, within MIT1002_04215at 84.435 kb on + strand, within MIT1002_04215at 84.435 kb on + strand, within MIT1002_04215at 84.435 kb on + strand, within MIT1002_04215at 84.435 kb on + strand, within MIT1002_04215at 84.435 kb on + strand, within MIT1002_04215at 84.443 kb on - strand, within MIT1002_04215at 84.443 kb on - strand, within MIT1002_04215at 84.443 kb on - strand, within MIT1002_04215at 84.445 kb on + strand, within MIT1002_04215at 84.445 kb on + strand, within MIT1002_04215at 84.495 kb on + strand, within MIT1002_04215at 84.501 kb on - strand, within MIT1002_04215at 84.545 kb on + strand, within MIT1002_04215at 84.553 kb on - strand, within MIT1002_04215at 84.626 kb on - strand, within MIT1002_04215at 84.634 kb on - strand, within MIT1002_04215at 84.713 kb on - strandat 84.907 kb on - strandat 84.916 kb on + strandat 84.924 kb on - strandat 84.924 kb on - strandat 84.931 kb on - strandat 84.931 kb on - strandat 84.931 kb on - strandat 85.009 kb on + strand, within MIT1002_04216at 85.010 kb on + strand, within MIT1002_04216at 85.010 kb on + strand, within MIT1002_04216at 85.010 kb on + strand, within MIT1002_04216at 85.017 kb on - strand, within MIT1002_04216at 85.034 kb on - strand, within MIT1002_04216at 85.036 kb on + strand, within MIT1002_04216at 85.043 kb on - strand, within MIT1002_04216at 85.107 kb on + strand, within MIT1002_04216at 85.114 kb on + strand, within MIT1002_04216at 85.114 kb on + strand, within MIT1002_04216at 85.114 kb on + strand, within MIT1002_04216at 85.122 kb on - strand, within MIT1002_04216at 85.122 kb on - strand, within MIT1002_04216at 85.122 kb on - strand, within MIT1002_04216at 85.122 kb on - strand, within MIT1002_04216at 85.156 kb on - strand, within MIT1002_04216at 85.158 kb on + strand, within MIT1002_04216at 85.166 kb on - strand, within MIT1002_04216at 85.168 kb on + strand, within MIT1002_04216at 85.176 kb on - strand, within MIT1002_04216at 85.176 kb on - strand, within MIT1002_04216at 85.190 kb on + strand, within MIT1002_04216at 85.251 kb on + strand, within MIT1002_04216at 85.254 kb on - strand, within MIT1002_04216at 85.260 kb on + strand, within MIT1002_04216at 85.260 kb on + strand, within MIT1002_04216at 85.260 kb on + strand, within MIT1002_04216at 85.260 kb on + strand, within MIT1002_04216at 85.268 kb on - strand, within MIT1002_04216at 85.268 kb on - strand, within MIT1002_04216at 85.268 kb on - strand, within MIT1002_04216at 85.278 kb on - strand, within MIT1002_04216at 85.278 kb on - strand, within MIT1002_04216at 85.278 kb on - strand, within MIT1002_04216at 85.278 kb on - strand, within MIT1002_04216at 85.321 kb on + strand, within MIT1002_04216at 85.329 kb on - strand, within MIT1002_04216at 85.457 kb on - strandat 85.604 kb on + strand, within MIT1002_04217at 85.611 kb on + strand, within MIT1002_04217at 85.621 kb on + strand, within MIT1002_04217at 85.640 kb on + strand, within MIT1002_04217at 85.642 kb on + strand, within MIT1002_04217at 85.719 kb on + strand, within MIT1002_04217at 85.727 kb on + strand, within MIT1002_04217at 85.777 kb on + strand, within MIT1002_04217at 85.777 kb on + strand, within MIT1002_04217at 85.777 kb on + strand, within MIT1002_04217at 85.777 kb on + strand, within MIT1002_04217at 85.777 kb on + strand, within MIT1002_04217at 85.777 kb on + strand, within MIT1002_04217at 85.779 kb on + strand, within MIT1002_04217at 85.784 kb on - strand, within MIT1002_04217at 85.785 kb on - strand, within MIT1002_04217at 85.785 kb on - strand, within MIT1002_04217at 85.785 kb on - strand, within MIT1002_04217at 85.785 kb on - strand, within MIT1002_04217at 85.785 kb on - strand, within MIT1002_04217at 85.785 kb on - strand, within MIT1002_04217at 85.787 kb on + strand, within MIT1002_04217at 85.823 kb on - strand, within MIT1002_04217at 85.823 kb on - strand, within MIT1002_04217at 85.831 kb on - strand, within MIT1002_04217at 85.832 kb on + strand, within MIT1002_04217at 85.840 kb on - strand, within MIT1002_04217at 85.920 kb on + strand, within MIT1002_04217at 85.921 kb on - strand, within MIT1002_04217at 85.950 kb on + strand, within MIT1002_04217at 85.969 kb on - strand, within MIT1002_04217at 85.969 kb on - strand, within MIT1002_04217at 85.969 kb on - strand, within MIT1002_04217at 85.969 kb on - strand, within MIT1002_04217at 85.972 kb on - strand, within MIT1002_04217at 86.008 kb on - strand, within MIT1002_04217at 86.008 kb on - strand, within MIT1002_04217at 86.119 kb on - strand, within MIT1002_04217at 86.144 kb on - strand, within MIT1002_04217at 86.153 kb on + strand, within MIT1002_04217at 86.154 kb on + strand, within MIT1002_04217at 86.154 kb on + strand, within MIT1002_04217at 86.154 kb on + strand, within MIT1002_04217at 86.154 kb on + strand, within MIT1002_04217at 86.161 kb on - strand, within MIT1002_04217at 86.162 kb on - strand, within MIT1002_04217at 86.162 kb on - strand, within MIT1002_04217at 86.162 kb on - strand, within MIT1002_04217at 86.162 kb on - strand, within MIT1002_04217at 86.162 kb on - strand, within MIT1002_04217at 86.169 kb on + strand, within MIT1002_04217at 86.185 kb on + strand, within MIT1002_04217at 86.249 kb on + strand, within MIT1002_04217at 86.297 kb on + strand, within MIT1002_04217at 86.297 kb on + strand, within MIT1002_04217at 86.305 kb on - strand, within MIT1002_04217at 86.320 kb on + strand, within MIT1002_04217at 86.320 kb on + strand, within MIT1002_04217at 86.328 kb on - strand, within MIT1002_04217at 86.328 kb on - strand, within MIT1002_04217at 86.388 kb on + strand, within MIT1002_04217at 86.413 kb on + strand, within MIT1002_04217at 86.414 kb on + strand, within MIT1002_04217at 86.428 kb on - strand, within MIT1002_04217at 86.428 kb on - strand, within MIT1002_04217

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 4
remove
83,941 + MIT1002_04215 0.29 -0.4
83,941 + MIT1002_04215 0.29 -0.1
83,949 + MIT1002_04215 0.29 +0.0
83,949 - MIT1002_04215 0.29 -0.5
83,949 - MIT1002_04215 0.29 +0.5
83,949 - MIT1002_04215 0.29 +0.5
83,950 - MIT1002_04215 0.29 -1.7
83,957 - MIT1002_04215 0.30 -0.0
83,958 - MIT1002_04215 0.30 -0.1
83,963 - MIT1002_04215 0.30 +1.1
83,963 - MIT1002_04215 0.30 +0.2
83,982 + MIT1002_04215 0.32 +0.3
84,070 + MIT1002_04215 0.40 -0.1
84,128 + MIT1002_04215 0.45 +0.7
84,164 + MIT1002_04215 0.48 -0.4
84,251 + MIT1002_04215 0.56 -2.8
84,380 + MIT1002_04215 0.67 -2.1
84,388 - MIT1002_04215 0.68 -1.6
84,419 - MIT1002_04215 0.70 +0.7
84,419 - MIT1002_04215 0.70 -0.1
84,435 + MIT1002_04215 0.72 -0.4
84,435 + MIT1002_04215 0.72 -1.3
84,435 + MIT1002_04215 0.72 -0.6
84,435 + MIT1002_04215 0.72 +0.2
84,435 + MIT1002_04215 0.72 -1.6
84,435 + MIT1002_04215 0.72 -0.1
84,443 - MIT1002_04215 0.72 -1.8
84,443 - MIT1002_04215 0.72 -0.9
84,443 - MIT1002_04215 0.72 +1.0
84,445 + MIT1002_04215 0.73 -0.2
84,445 + MIT1002_04215 0.73 +0.7
84,495 + MIT1002_04215 0.77 -2.1
84,501 - MIT1002_04215 0.78 -0.2
84,545 + MIT1002_04215 0.81 -1.0
84,553 - MIT1002_04215 0.82 +0.3
84,626 - MIT1002_04215 0.88 -2.6
84,634 - MIT1002_04215 0.89 -0.3
84,713 - -4.5
84,907 - +0.3
84,916 + +0.7
84,924 - +0.1
84,924 - -0.1
84,931 - +1.2
84,931 - +0.8
84,931 - +0.8
85,009 + MIT1002_04216 0.14 +0.2
85,010 + MIT1002_04216 0.15 -0.7
85,010 + MIT1002_04216 0.15 +1.7
85,010 + MIT1002_04216 0.15 +0.1
85,017 - MIT1002_04216 0.16 -1.1
85,034 - MIT1002_04216 0.19 -1.1
85,036 + MIT1002_04216 0.20 +0.1
85,043 - MIT1002_04216 0.21 +1.1
85,107 + MIT1002_04216 0.33 -0.7
85,114 + MIT1002_04216 0.35 -1.0
85,114 + MIT1002_04216 0.35 -0.3
85,114 + MIT1002_04216 0.35 +0.2
85,122 - MIT1002_04216 0.36 -0.2
85,122 - MIT1002_04216 0.36 +0.1
85,122 - MIT1002_04216 0.36 -0.2
85,122 - MIT1002_04216 0.36 +0.2
85,156 - MIT1002_04216 0.43 +0.2
85,158 + MIT1002_04216 0.43 -2.3
85,166 - MIT1002_04216 0.45 -1.0
85,168 + MIT1002_04216 0.45 -0.6
85,176 - MIT1002_04216 0.47 -1.0
85,176 - MIT1002_04216 0.47 +1.1
85,190 + MIT1002_04216 0.49 -1.2
85,251 + MIT1002_04216 0.61 +0.2
85,254 - MIT1002_04216 0.62 -2.2
85,260 + MIT1002_04216 0.63 -1.5
85,260 + MIT1002_04216 0.63 +0.6
85,260 + MIT1002_04216 0.63 -0.8
85,260 + MIT1002_04216 0.63 -2.2
85,268 - MIT1002_04216 0.65 +0.5
85,268 - MIT1002_04216 0.65 +0.2
85,268 - MIT1002_04216 0.65 +0.1
85,278 - MIT1002_04216 0.66 -2.0
85,278 - MIT1002_04216 0.66 -0.2
85,278 - MIT1002_04216 0.66 -0.3
85,278 - MIT1002_04216 0.66 +0.3
85,321 + MIT1002_04216 0.75 -1.1
85,329 - MIT1002_04216 0.76 -0.2
85,457 - +0.6
85,604 + MIT1002_04217 0.14 -0.5
85,611 + MIT1002_04217 0.15 -0.6
85,621 + MIT1002_04217 0.16 +0.2
85,640 + MIT1002_04217 0.17 -0.5
85,642 + MIT1002_04217 0.17 -1.0
85,719 + MIT1002_04217 0.24 +0.6
85,727 + MIT1002_04217 0.25 -1.5
85,777 + MIT1002_04217 0.30 -0.9
85,777 + MIT1002_04217 0.30 -0.1
85,777 + MIT1002_04217 0.30 -0.4
85,777 + MIT1002_04217 0.30 +0.2
85,777 + MIT1002_04217 0.30 +0.6
85,777 + MIT1002_04217 0.30 -0.4
85,779 + MIT1002_04217 0.30 +0.1
85,784 - MIT1002_04217 0.30 -1.2
85,785 - MIT1002_04217 0.31 -0.1
85,785 - MIT1002_04217 0.31 -0.4
85,785 - MIT1002_04217 0.31 +0.4
85,785 - MIT1002_04217 0.31 -0.1
85,785 - MIT1002_04217 0.31 -0.4
85,785 - MIT1002_04217 0.31 +0.2
85,787 + MIT1002_04217 0.31 +0.8
85,823 - MIT1002_04217 0.34 -0.8
85,823 - MIT1002_04217 0.34 +0.5
85,831 - MIT1002_04217 0.35 -0.9
85,832 + MIT1002_04217 0.35 -0.4
85,840 - MIT1002_04217 0.36 +0.6
85,920 + MIT1002_04217 0.43 +0.4
85,921 - MIT1002_04217 0.43 -1.3
85,950 + MIT1002_04217 0.46 -0.9
85,969 - MIT1002_04217 0.47 +1.2
85,969 - MIT1002_04217 0.47 +0.6
85,969 - MIT1002_04217 0.47 -0.3
85,969 - MIT1002_04217 0.47 -0.0
85,972 - MIT1002_04217 0.48 -0.1
86,008 - MIT1002_04217 0.51 -1.2
86,008 - MIT1002_04217 0.51 -0.3
86,119 - MIT1002_04217 0.61 +0.1
86,144 - MIT1002_04217 0.63 -0.1
86,153 + MIT1002_04217 0.64 +0.3
86,154 + MIT1002_04217 0.64 +0.7
86,154 + MIT1002_04217 0.64 -0.0
86,154 + MIT1002_04217 0.64 -0.8
86,154 + MIT1002_04217 0.64 +0.1
86,161 - MIT1002_04217 0.65 -0.5
86,162 - MIT1002_04217 0.65 -1.8
86,162 - MIT1002_04217 0.65 +1.5
86,162 - MIT1002_04217 0.65 +0.1
86,162 - MIT1002_04217 0.65 +1.2
86,162 - MIT1002_04217 0.65 +1.4
86,169 + MIT1002_04217 0.65 +0.7
86,185 + MIT1002_04217 0.67 +0.0
86,249 + MIT1002_04217 0.73 +1.1
86,297 + MIT1002_04217 0.77 +1.6
86,297 + MIT1002_04217 0.77 -0.2
86,305 - MIT1002_04217 0.78 +1.0
86,320 + MIT1002_04217 0.79 +0.3
86,320 + MIT1002_04217 0.79 -0.5
86,328 - MIT1002_04217 0.80 +0.7
86,328 - MIT1002_04217 0.80 -0.1
86,388 + MIT1002_04217 0.85 +0.0
86,413 + MIT1002_04217 0.88 -0.5
86,414 + MIT1002_04217 0.88 -0.5
86,428 - MIT1002_04217 0.89 -0.8
86,428 - MIT1002_04217 0.89 +0.3

Or see this region's nucleotide sequence