Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04072

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
4,569,612	-		MIT1002_04071	0.12	-1.4
4,569,636	-		MIT1002_04071	0.15	-1.2
4,569,636	-		MIT1002_04071	0.15	-1.4
4,569,636	-		MIT1002_04071	0.15	+1.4
4,569,636	-		MIT1002_04071	0.15	-0.5
4,569,643	-		MIT1002_04071	0.16	-0.5
4,569,643	-		MIT1002_04071	0.16	+2.2
4,569,643	-		MIT1002_04071	0.16	-0.5
4,569,701	-		MIT1002_04071	0.24	-1.1
4,569,891	-		MIT1002_04071	0.51	-2.7
4,569,904	-		MIT1002_04071	0.53	-0.7
4,569,968	-		MIT1002_04071	0.62	-2.0
4,570,085	-		MIT1002_04071	0.78	-1.3
4,570,132	-		MIT1002_04071	0.85	+0.6
4,570,139	-		MIT1002_04071	0.86	-2.2
4,570,139	-		MIT1002_04071	0.86	-0.7
4,570,187	-				-1.1
4,570,482	+				+1.1
4,570,559	-				+1.5
4,570,580	+				+2.3
4,570,593	+				+1.1
4,570,601	-				+1.6
4,570,601	-				+1.6
4,570,603	-				+0.8
4,570,663	-		MIT1002_04072	0.14	+1.4
4,570,733	-		MIT1002_04072	0.22	-0.1
4,570,806	+		MIT1002_04072	0.30	+1.4
4,570,822	-		MIT1002_04072	0.32	+0.9
4,570,833	-		MIT1002_04072	0.34	+1.1
4,570,833	-		MIT1002_04072	0.34	+0.9
4,570,833	-		MIT1002_04072	0.34	+1.1
4,570,851	+		MIT1002_04072	0.36	+1.9
4,570,851	+		MIT1002_04072	0.36	+0.2
4,570,851	+		MIT1002_04072	0.36	+1.0
4,570,851	+		MIT1002_04072	0.36	+1.8
4,570,851	+		MIT1002_04072	0.36	+0.6
4,570,851	+		MIT1002_04072	0.36	-0.7
4,570,859	-		MIT1002_04072	0.37	+0.8
4,570,859	-		MIT1002_04072	0.37	+1.0
4,570,877	+		MIT1002_04072	0.39	+0.9
4,570,877	+		MIT1002_04072	0.39	-1.2
4,570,877	+		MIT1002_04072	0.39	+0.5
4,570,877	+		MIT1002_04072	0.39	+2.3
4,570,877	+		MIT1002_04072	0.39	+1.0
4,570,877	+		MIT1002_04072	0.39	+0.6
4,570,877	+		MIT1002_04072	0.39	+0.4
4,570,882	+		MIT1002_04072	0.39	+0.9
4,570,883	+		MIT1002_04072	0.39	+0.6
4,570,885	-		MIT1002_04072	0.40	-0.9
4,570,907	+		MIT1002_04072	0.42	+1.2
4,570,927	+		MIT1002_04072	0.44	+0.5
4,570,935	-		MIT1002_04072	0.45	+0.6
4,570,981	+		MIT1002_04072	0.51	+0.7
4,570,981	+		MIT1002_04072	0.51	+1.3
4,570,995	-		MIT1002_04072	0.52	-0.5
4,571,014	-		MIT1002_04072	0.55	+2.1
4,571,120	+		MIT1002_04072	0.67	+1.6
4,571,157	+		MIT1002_04072	0.71	+0.8
4,571,182	-		MIT1002_04072	0.74	+0.5
4,571,191	+		MIT1002_04072	0.75	+1.0
4,571,191	+		MIT1002_04072	0.75	+0.6
4,571,191	+		MIT1002_04072	0.75	+0.3
4,571,191	+		MIT1002_04072	0.75	+2.0
4,571,191	+		MIT1002_04072	0.75	+1.0
4,571,191	+		MIT1002_04072	0.75	+0.3
4,571,199	-		MIT1002_04072	0.76	+1.7
4,571,244	+		MIT1002_04072	0.81	+0.8
4,571,244	+		MIT1002_04072	0.81	-1.3
4,571,249	+		MIT1002_04072	0.82	+1.1
4,571,286	-		MIT1002_04072	0.86	-0.2
4,571,350	+				+1.0
4,571,362	+				+1.0
4,571,408	+				+0.6
4,571,414	-				+0.4
4,571,416	-				-0.5
4,571,508	+				-2.5
4,571,518	+				-0.4
4,571,518	+				+1.1
4,571,518	+				-2.3
4,571,518	+				-0.2
4,571,518	+				+0.7
4,571,526	-				+0.2
4,571,526	-				+0.6
4,571,562	+				+0.4
4,571,572	-				-1.2
4,571,630	-				+0.5
4,571,630	-				-0.4
4,571,661	-				+0.2
4,571,661	-				+0.6
4,571,666	-				-0.1
4,571,694	-				-0.3
4,571,694	-				+0.9
4,571,727	+		MIT1002_04073	0.12	-1.9
4,571,795	+		MIT1002_04073	0.18	+0.1
4,571,803	-		MIT1002_04073	0.18	-1.1
4,571,812	+		MIT1002_04073	0.19	+0.9
4,571,820	-		MIT1002_04073	0.20	-1.6
4,571,822	-		MIT1002_04073	0.20	-0.2
4,571,845	+		MIT1002_04073	0.22	+1.9
4,571,909	+		MIT1002_04073	0.27	+0.1
4,571,977	-		MIT1002_04073	0.33	-0.3
4,571,990	+		MIT1002_04073	0.34	+1.0
4,571,993	-		MIT1002_04073	0.34	-0.4
4,572,009	+		MIT1002_04073	0.35	-0.6
4,572,038	+		MIT1002_04073	0.38	-0.6
4,572,038	+		MIT1002_04073	0.38	+1.1
4,572,038	+		MIT1002_04073	0.38	-0.2
4,572,038	+		MIT1002_04073	0.38	+1.2
4,572,046	-		MIT1002_04073	0.38	-0.2
4,572,046	-		MIT1002_04073	0.38	+0.1
4,572,046	-		MIT1002_04073	0.38	-1.1
4,572,104	+		MIT1002_04073	0.43	+0.2
4,572,104	+		MIT1002_04073	0.43	+0.2
4,572,104	+		MIT1002_04073	0.43	-0.8
4,572,112	-		MIT1002_04073	0.44	+0.5
4,572,149	+		MIT1002_04073	0.47	+0.1
4,572,162	-		MIT1002_04073	0.48	-1.8
4,572,181	-		MIT1002_04073	0.50	-0.4
4,572,311	-		MIT1002_04073	0.60	+0.0
4,572,311	-		MIT1002_04073	0.60	-0.5
4,572,311	-		MIT1002_04073	0.60	+1.0
4,572,325	-		MIT1002_04073	0.62	-1.5
4,572,331	-		MIT1002_04073	0.62	+1.0
4,572,343	+		MIT1002_04073	0.63	+0.0
4,572,391	+		MIT1002_04073	0.67	+1.0