Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03945

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
4,428,153	+		MIT1002_03944	0.23	-0.3
4,428,153	+		MIT1002_03944	0.23	+0.3
4,428,220	+		MIT1002_03944	0.30	-0.6
4,428,280	-		MIT1002_03944	0.36	+0.4
4,428,345	-		MIT1002_03944	0.43	+1.0
4,428,352	-		MIT1002_03944	0.44	-1.0
4,428,352	-		MIT1002_03944	0.44	+0.0
4,428,430	+		MIT1002_03944	0.52	-2.3
4,428,508	-		MIT1002_03944	0.60	-0.3
4,428,521	+		MIT1002_03944	0.61	-0.9
4,428,599	-		MIT1002_03944	0.69	+0.2
4,428,601	+		MIT1002_03944	0.69	+0.5
4,428,626	+		MIT1002_03944	0.72	+0.7
4,428,672	+		MIT1002_03944	0.77	+1.5
4,428,680	-		MIT1002_03944	0.78	-2.3
4,428,754	+		MIT1002_03944	0.85	+0.3
4,428,764	+		MIT1002_03944	0.86	+0.2
4,428,767	-		MIT1002_03944	0.87	+0.2
4,428,831	+				+0.9
4,428,831	-				-0.9
4,428,870	+				-0.9
4,428,878	-				-0.8
4,428,878	-				+0.5
4,428,878	-				+2.5
4,428,878	-				-0.2
4,428,942	+				+0.1
4,428,950	-				+0.4
4,428,967	+				+1.6
4,428,975	-				+0.8
4,428,975	-				-2.5
4,428,987	+				-0.4
4,429,050	-				+0.1
4,429,101	-				+1.0
4,429,161	+				+1.3
4,429,246	+		MIT1002_03945	0.23	-0.1
4,429,256	-		MIT1002_03945	0.25	+0.4
4,429,265	+		MIT1002_03945	0.27	+0.6
4,429,266	+		MIT1002_03945	0.27	-1.0
4,429,266	+		MIT1002_03945	0.27	-1.8
4,429,276	+		MIT1002_03945	0.29	+1.2
4,429,375	-		MIT1002_03945	0.52	+0.5
4,429,399	+		MIT1002_03945	0.57	+0.3
4,429,422	-		MIT1002_03945	0.63	-0.0
4,429,483	-		MIT1002_03945	0.76	+0.5
4,429,564	-				+0.8
4,429,598	+				+0.0
4,429,598	+				-0.7
4,429,598	+				+0.1
4,429,598	+				-0.5
4,429,606	-				-0.5
4,429,635	-				-1.2
4,429,639	+				+1.2
4,429,683	-		MIT1002_03946	0.17	+0.5
4,429,683	-		MIT1002_03946	0.17	+0.7
4,429,694	+		MIT1002_03946	0.21	+1.2
4,429,694	+		MIT1002_03946	0.21	-1.9
4,429,695	-		MIT1002_03946	0.21	+0.0
4,429,841	+		MIT1002_03946	0.77	+0.1
4,429,841	+		MIT1002_03946	0.77	-2.0
4,429,966	+				+0.4
4,429,974	-				+0.2
4,429,990	-				-0.1
4,430,004	+				-0.0
4,430,148	+				+0.2
4,430,148	+				-1.3
4,430,156	-				+0.7
4,430,156	-				-0.6
4,430,156	-				+0.3
4,430,257	-		MIT1002_03947	0.12	-0.3
4,430,264	+		MIT1002_03947	0.12	-0.2
4,430,333	+		MIT1002_03947	0.15	+0.3
4,430,379	+		MIT1002_03947	0.18	+0.3
4,430,381	+		MIT1002_03947	0.18	-1.1
4,430,413	+		MIT1002_03947	0.19	+0.0
4,430,416	+		MIT1002_03947	0.19	+0.1
4,430,424	-		MIT1002_03947	0.20	-2.1
4,430,510	+		MIT1002_03947	0.24	+1.2
4,430,510	+		MIT1002_03947	0.24	+0.4
4,430,523	-		MIT1002_03947	0.24	+1.5
4,430,523	-		MIT1002_03947	0.24	-0.2
4,430,528	-		MIT1002_03947	0.24	-0.1
4,430,528	-		MIT1002_03947	0.24	-1.3