Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03932

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
4,407,051	+				-1.2
4,407,059	-				+1.0
4,407,143	+				+0.6
4,407,158	-				-0.7
4,407,277	+				-0.7
4,407,285	-				-0.6
4,407,337	-				-0.8
4,407,359	-				+1.0
4,407,379	+				+0.0
4,407,423	-		MIT1002_03931	0.16	-1.8
4,407,438	-		MIT1002_03931	0.18	+0.9
4,407,438	-		MIT1002_03931	0.18	+0.6
4,407,456	-		MIT1002_03931	0.20	+0.4
4,407,458	+		MIT1002_03931	0.20	-1.3
4,407,524	+		MIT1002_03931	0.29	-0.5
4,407,532	-		MIT1002_03931	0.30	-1.0
4,407,547	-		MIT1002_03931	0.32	-0.6
4,407,566	-		MIT1002_03931	0.35	-0.1
4,407,580	+		MIT1002_03931	0.37	-0.6
4,407,587	-		MIT1002_03931	0.38	+0.3
4,407,624	-		MIT1002_03931	0.43	+0.3
4,407,729	+		MIT1002_03931	0.57	-0.2
4,407,773	+		MIT1002_03931	0.63	+0.8
4,407,862	-		MIT1002_03931	0.75	+0.4
4,407,864	+		MIT1002_03931	0.75	-0.7
4,407,869	+		MIT1002_03931	0.76	-0.1
4,407,869	+		MIT1002_03931	0.76	-0.2
4,407,869	+		MIT1002_03931	0.76	-0.2
4,407,872	-		MIT1002_03931	0.76	-0.6
4,407,877	-		MIT1002_03931	0.77	-1.6
4,407,877	-		MIT1002_03931	0.77	+0.2
4,407,877	-		MIT1002_03931	0.77	+2.6
4,407,886	+		MIT1002_03931	0.78	-1.1
4,407,957	+		MIT1002_03931	0.87	-0.3
4,407,974	-		MIT1002_03931	0.90	+0.4
4,408,019	+				+0.2
4,408,027	-				+0.1
4,408,103	+				+0.9
4,408,140	+				+1.4
4,408,260	+		MIT1002_03932	0.16	-1.3
4,408,262	-		MIT1002_03932	0.16	-0.2
4,408,272	-		MIT1002_03932	0.17	-1.6
4,408,296	-		MIT1002_03932	0.19	-0.0
4,408,345	+		MIT1002_03932	0.22	+0.0
4,408,561	+		MIT1002_03932	0.39	+1.3
4,408,561	+		MIT1002_03932	0.39	+1.4
4,408,569	+		MIT1002_03932	0.39	+0.8
4,408,577	-		MIT1002_03932	0.40	+0.9
4,408,601	-		MIT1002_03932	0.42	+0.6
4,408,621	-		MIT1002_03932	0.43	+0.2
4,408,621	-		MIT1002_03932	0.43	-1.3
4,408,696	+		MIT1002_03932	0.49	+0.0
4,408,709	+		MIT1002_03932	0.50	-2.0
4,408,717	-		MIT1002_03932	0.50	+0.4
4,408,717	-		MIT1002_03932	0.50	-1.1
4,408,733	+		MIT1002_03932	0.52	-2.2
4,408,738	+		MIT1002_03932	0.52	+0.4
4,408,738	+		MIT1002_03932	0.52	-1.9
4,408,927	-		MIT1002_03932	0.66	-1.2
4,408,949	-		MIT1002_03932	0.68	+1.8
4,408,994	-		MIT1002_03932	0.71	-0.7
4,409,043	+		MIT1002_03932	0.75	-0.9
4,409,093	+		MIT1002_03932	0.79	+1.4
4,409,098	+		MIT1002_03932	0.79	+1.0
4,409,122	+		MIT1002_03932	0.81	-2.5
4,409,146	+		MIT1002_03932	0.83	+0.4
4,409,166	+		MIT1002_03932	0.84	+0.6
4,409,172	+		MIT1002_03932	0.85	-1.1
4,409,172	+		MIT1002_03932	0.85	+0.6
4,409,172	+		MIT1002_03932	0.85	+1.0
4,409,172	+		MIT1002_03932	0.85	+0.6
4,409,172	+		MIT1002_03932	0.85	-0.2
4,409,172	+		MIT1002_03932	0.85	+1.2
4,409,172	+		MIT1002_03932	0.85	+2.0
4,409,172	+		MIT1002_03932	0.85	+0.8
4,409,174	-		MIT1002_03932	0.85	-0.7
4,409,174	-		MIT1002_03932	0.85	-0.4
4,409,180	-		MIT1002_03932	0.85	-0.5
4,409,180	-		MIT1002_03932	0.85	+0.4
4,409,180	-		MIT1002_03932	0.85	-0.5
4,409,180	-		MIT1002_03932	0.85	+0.7
4,409,190	-		MIT1002_03932	0.86	-0.7
4,409,190	-		MIT1002_03932	0.86	+1.4
4,409,200	-		MIT1002_03932	0.87	-0.3
4,409,285	-				-0.2
4,409,365	-				-0.3
4,409,608	-				-0.1
4,409,665	+				-1.2
4,409,665	+				-0.1
4,409,665	+				-0.8
4,409,688	-				-0.4
4,409,762	+				-0.2
4,409,780	-				-0.2
4,409,797	+				-0.2
4,409,797	+				+0.3
4,409,839	-		MIT1002_03933	0.11	+0.6
4,409,901	-		MIT1002_03933	0.13	+0.3
4,409,922	+		MIT1002_03933	0.14	+0.0
4,409,938	+		MIT1002_03933	0.14	+0.7
4,409,981	-		MIT1002_03933	0.16	+0.4
4,410,023	-		MIT1002_03933	0.17	+0.6
4,410,146	+		MIT1002_03933	0.21	-0.7
4,410,176	+		MIT1002_03933	0.22	-1.0
4,410,239	+		MIT1002_03933	0.25	-0.5
4,410,265	-		MIT1002_03933	0.25	+1.1
4,410,292	-		MIT1002_03933	0.26	+0.6
4,410,357	+		MIT1002_03933	0.29	+2.8
4,410,357	+		MIT1002_03933	0.29	+1.2
4,410,357	+		MIT1002_03933	0.29	-1.3
4,410,365	-		MIT1002_03933	0.29	-0.5