Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03893

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
4,358,805	+		MIT1002_03892	0.19	+0.6
4,358,805	+		MIT1002_03892	0.19	+2.1
4,358,813	+		MIT1002_03892	0.19	+1.1
4,358,821	-		MIT1002_03892	0.20	-1.6
4,358,826	-		MIT1002_03892	0.21	+0.3
4,358,873	+		MIT1002_03892	0.25	+2.6
4,358,879	-		MIT1002_03892	0.26	+2.1
4,358,881	-		MIT1002_03892	0.26	-0.3
4,358,910	+		MIT1002_03892	0.28	-0.9
4,358,959	-		MIT1002_03892	0.33	-0.1
4,358,969	-		MIT1002_03892	0.34	-0.3
4,358,971	-		MIT1002_03892	0.34	+0.6
4,359,007	-		MIT1002_03892	0.37	-1.1
4,359,040	+		MIT1002_03892	0.40	+0.6
4,359,040	+		MIT1002_03892	0.40	-1.1
4,359,262	+		MIT1002_03892	0.61	-0.5
4,359,265	-		MIT1002_03892	0.61	+1.3
4,359,270	-		MIT1002_03892	0.62	-0.9
4,359,421	-		MIT1002_03892	0.76	-0.3
4,359,447	+		MIT1002_03892	0.78	+2.3
4,359,455	-		MIT1002_03892	0.79	+0.5
4,359,469	+		MIT1002_03892	0.80	+0.7
4,359,487	-		MIT1002_03892	0.82	+0.1
4,359,487	-		MIT1002_03892	0.82	-0.2
4,359,501	+		MIT1002_03892	0.83	+0.2
4,359,560	+		MIT1002_03892	0.89	+0.6
4,359,560	-		MIT1002_03892	0.89	+1.8
4,359,571	+		MIT1002_03892	0.90	+0.9
4,359,633	-				+0.3
4,359,635	+				+0.7
4,359,694	-				-2.3
4,359,844	+				+0.9
4,359,883	-				-1.1
4,359,918	-				-0.2
4,359,968	-				+0.0
4,360,021	-		MIT1002_03893	0.12	+0.3
4,360,021	-		MIT1002_03893	0.12	+1.8
4,360,021	-		MIT1002_03893	0.12	-0.2
4,360,021	-		MIT1002_03893	0.12	+0.6
4,360,041	-		MIT1002_03893	0.13	+0.6
4,360,106	-		MIT1002_03893	0.17	-2.3
4,360,106	-		MIT1002_03893	0.17	+0.4
4,360,108	+		MIT1002_03893	0.17	+0.2
4,360,117	-		MIT1002_03893	0.17	+1.5
4,360,165	+		MIT1002_03893	0.20	-0.1
4,360,165	+		MIT1002_03893	0.20	-1.2
4,360,244	+		MIT1002_03893	0.24	+2.2
4,360,245	-		MIT1002_03893	0.24	+0.3
4,360,264	+		MIT1002_03893	0.25	+0.5
4,360,278	-		MIT1002_03893	0.26	+5.1
4,360,300	-		MIT1002_03893	0.27	+0.1
4,360,349	+		MIT1002_03893	0.29	+0.3
4,360,349	+		MIT1002_03893	0.29	+0.1
4,360,349	+		MIT1002_03893	0.29	+0.0
4,360,357	-		MIT1002_03893	0.30	-0.3
4,360,357	-		MIT1002_03893	0.30	+1.3
4,360,396	+		MIT1002_03893	0.32	+0.7
4,360,504	+		MIT1002_03893	0.37	-0.3
4,360,540	+		MIT1002_03893	0.39	+0.6
4,360,540	-		MIT1002_03893	0.39	-0.5
4,360,653	+		MIT1002_03893	0.45	+0.6
4,360,874	+		MIT1002_03893	0.57	-0.5
4,360,884	-		MIT1002_03893	0.57	+0.1
4,360,894	-		MIT1002_03893	0.58	-0.9
4,360,967	+		MIT1002_03893	0.61	-0.9
4,361,018	-		MIT1002_03893	0.64	-1.2
4,361,038	+		MIT1002_03893	0.65	-1.1
4,361,215	-		MIT1002_03893	0.74	+0.1
4,361,308	+		MIT1002_03893	0.79	+0.4
4,361,316	-		MIT1002_03893	0.79	-0.0
4,361,385	+		MIT1002_03893	0.83	+0.9
4,361,393	-		MIT1002_03893	0.83	-0.6
4,361,398	-		MIT1002_03893	0.84	+0.9
4,361,417	-		MIT1002_03893	0.85	-0.4
4,361,443	-		MIT1002_03893	0.86	+1.2
4,361,462	-		MIT1002_03893	0.87	+0.6
4,361,472	-		MIT1002_03893	0.88	-0.2
4,361,510	+		MIT1002_03893	0.90	+0.4
4,361,510	-		MIT1002_03893	0.90	+0.5
4,361,518	-				-0.3
4,361,533	+				+0.5
4,361,563	+				-0.8
4,361,563	+				+0.2
4,361,634	+				+1.9
4,361,634	+				+1.2
4,361,634	+				+0.8
4,361,642	-				+0.1
4,361,642	-				-0.8
4,361,642	-				+0.3
4,361,642	-				+3.0
4,361,721	+				-0.8
4,361,821	+				-0.4
4,361,831	-				+0.0
4,361,853	-		MIT1002_03894	0.12	-1.3
4,361,998	+		MIT1002_03894	0.26	+0.6
4,361,998	+		MIT1002_03894	0.26	+0.7
4,362,038	+		MIT1002_03894	0.30	+1.5
4,362,038	+		MIT1002_03894	0.30	+1.1
4,362,038	+		MIT1002_03894	0.30	+0.0
4,362,046	-		MIT1002_03894	0.31	+1.6
4,362,046	-		MIT1002_03894	0.31	+0.9
4,362,127	-		MIT1002_03894	0.39	+1.9
4,362,133	+		MIT1002_03894	0.39	+0.8
4,362,136	+		MIT1002_03894	0.40	+1.8
4,362,136	+		MIT1002_03894	0.40	+0.3
4,362,169	-		MIT1002_03894	0.43	+0.4
4,362,232	-		MIT1002_03894	0.49	+0.7
4,362,264	+		MIT1002_03894	0.52	+0.2
4,362,264	+		MIT1002_03894	0.52	+1.6
4,362,265	+		MIT1002_03894	0.52	-0.7
4,362,267	+		MIT1002_03894	0.52	-0.4
4,362,273	-		MIT1002_03894	0.53	-0.7
4,362,286	+		MIT1002_03894	0.54	+1.0
4,362,301	+		MIT1002_03894	0.56	+1.0
4,362,411	-		MIT1002_03894	0.67	+1.2
4,362,464	-		MIT1002_03894	0.72	+0.6
4,362,536	+		MIT1002_03894	0.79	-0.3
4,362,536	+		MIT1002_03894	0.79	+1.3
4,362,551	-		MIT1002_03894	0.80	-0.2
4,362,583	+		MIT1002_03894	0.83	-1.4
4,362,591	-		MIT1002_03894	0.84	+0.0