Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03808

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
4,252,519	-		MIT1002_03806	0.38	-2.0
4,252,636	+		MIT1002_03806	0.61	-1.2
4,252,644	-		MIT1002_03806	0.63	-0.2
4,252,691	-		MIT1002_03806	0.72	+0.7
4,252,691	-		MIT1002_03806	0.72	-0.8
4,252,697	-		MIT1002_03806	0.74	-0.1
4,252,745	-		MIT1002_03806	0.83	-0.0
4,252,803	-				+0.3
4,252,883	+		MIT1002_03807	0.11	-0.7
4,252,891	-		MIT1002_03807	0.12	-0.2
4,252,909	-		MIT1002_03807	0.15	+1.6
4,252,919	+		MIT1002_03807	0.17	-0.3
4,252,919	+		MIT1002_03807	0.17	+0.3
4,252,927	-		MIT1002_03807	0.19	+0.4
4,253,016	-		MIT1002_03807	0.34	-0.6
4,253,021	-		MIT1002_03807	0.35	+1.2
4,253,082	-		MIT1002_03807	0.45	+0.6
4,253,119	+		MIT1002_03807	0.52	-2.3
4,253,127	-		MIT1002_03807	0.53	-1.8
4,253,129	+		MIT1002_03807	0.54	-2.7
4,253,137	-		MIT1002_03807	0.55	+2.1
4,253,178	+		MIT1002_03807	0.62	-0.6
4,253,196	-		MIT1002_03807	0.65	-0.0
4,253,232	+		MIT1002_03807	0.72	+0.1
4,253,232	+		MIT1002_03807	0.72	-0.0
4,253,354	+				+0.7
4,253,375	+				+0.9
4,253,380	+				+0.9
4,253,444	+				+0.2
4,253,446	+				+0.4
4,253,446	+				+0.7
4,253,446	+				+0.6
4,253,453	+				+1.0
4,253,454	-				-0.9
4,253,454	-				-0.3
4,253,461	-				-0.3
4,253,466	+				+0.0
4,253,466	-				-0.3
4,253,466	-				+0.4
4,253,478	+				+1.6
4,253,486	-				+0.7
4,253,624	+		MIT1002_03808	0.17	-0.7
4,253,632	-		MIT1002_03808	0.18	+0.8
4,253,710	-		MIT1002_03808	0.30	+0.8
4,253,766	-		MIT1002_03808	0.39	-2.4
4,253,781	+		MIT1002_03808	0.41	-0.4
4,253,781	+		MIT1002_03808	0.41	+1.3
4,253,789	+		MIT1002_03808	0.42	+0.1
4,253,789	-		MIT1002_03808	0.42	+0.9
4,253,797	-		MIT1002_03808	0.44	+1.0
4,253,854	-		MIT1002_03808	0.52	+1.2
4,253,859	-		MIT1002_03808	0.53	-1.7
4,253,861	+		MIT1002_03808	0.53	-0.0
4,253,892	+		MIT1002_03808	0.58	+1.6
4,253,981	+		MIT1002_03808	0.72	-0.7
4,253,991	+		MIT1002_03808	0.73	-0.1
4,253,999	+		MIT1002_03808	0.75	+0.3
4,254,007	-		MIT1002_03808	0.76	+0.3
4,254,007	-		MIT1002_03808	0.76	+0.1
4,254,015	-		MIT1002_03808	0.77	+0.1
4,254,029	-		MIT1002_03808	0.79	+1.6
4,254,029	-		MIT1002_03808	0.79	+1.1
4,254,036	+		MIT1002_03808	0.80	-0.3
4,254,036	+		MIT1002_03808	0.80	-0.2
4,254,044	-		MIT1002_03808	0.82	-0.6
4,254,044	-		MIT1002_03808	0.82	-2.2
4,254,044	-		MIT1002_03808	0.82	+0.8
4,254,055	+		MIT1002_03808	0.83	-0.1
4,254,085	-		MIT1002_03808	0.88	+0.1
4,254,328	-		MIT1002_03809	0.13	-1.6
4,254,329	-		MIT1002_03809	0.13	+1.3
4,254,344	+		MIT1002_03809	0.14	-0.7
4,254,344	+		MIT1002_03809	0.14	+1.5
4,254,391	-		MIT1002_03809	0.19	-0.2
4,254,392	-		MIT1002_03809	0.19	+0.7
4,254,435	+		MIT1002_03809	0.22	+0.4
4,254,518	+		MIT1002_03809	0.30	+0.5
4,254,539	+		MIT1002_03809	0.32	-1.0
4,254,555	-		MIT1002_03809	0.33	-0.2
4,254,562	-		MIT1002_03809	0.34	-0.6
4,254,563	-		MIT1002_03809	0.34	+0.0
4,254,686	+		MIT1002_03809	0.45	-1.4
4,254,687	+		MIT1002_03809	0.45	-0.2
4,254,695	-		MIT1002_03809	0.46	+0.9
4,254,704	-		MIT1002_03809	0.47	+0.1
4,254,806	-		MIT1002_03809	0.56	-0.7
4,254,810	+		MIT1002_03809	0.56	+0.7
4,254,830	+		MIT1002_03809	0.58	-1.0
4,254,837	-		MIT1002_03809	0.59	+1.0
4,254,838	-		MIT1002_03809	0.59	+1.3
4,254,916	+		MIT1002_03809	0.66	-0.2
4,254,931	-		MIT1002_03809	0.67	-1.0
4,254,978	+		MIT1002_03809	0.71	+0.5
4,254,986	-		MIT1002_03809	0.72	-0.8
4,255,080	+		MIT1002_03809	0.80	-0.3
4,255,088	-		MIT1002_03809	0.81	-0.6
4,255,098	-		MIT1002_03809	0.82	-0.8
4,255,106	+		MIT1002_03809	0.83	+0.7
4,255,106	+		MIT1002_03809	0.83	-0.2
4,255,112	-		MIT1002_03809	0.83	+0.7