Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03552

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
3,972,877	-		MIT1002_03551	0.13	-0.8
3,972,878	-		MIT1002_03551	0.13	-1.7
3,972,879	-		MIT1002_03551	0.13	-1.4
3,972,928	+		MIT1002_03551	0.18	+0.2
3,972,933	+		MIT1002_03551	0.18	-0.1
3,972,933	+		MIT1002_03551	0.18	-1.0
3,972,933	+		MIT1002_03551	0.18	-1.4
3,972,936	-		MIT1002_03551	0.18	+0.1
3,972,941	-		MIT1002_03551	0.19	-0.9
3,972,941	-		MIT1002_03551	0.19	-0.4
3,972,941	-		MIT1002_03551	0.19	-1.1
3,972,946	+		MIT1002_03551	0.19	-0.4
3,972,976	+		MIT1002_03551	0.22	-0.7
3,973,017	-		MIT1002_03551	0.26	-0.5
3,973,025	-		MIT1002_03551	0.27	+2.5
3,973,080	-		MIT1002_03551	0.32	-0.4
3,973,083	+		MIT1002_03551	0.32	-0.8
3,973,083	+		MIT1002_03551	0.32	-2.0
3,973,091	-		MIT1002_03551	0.33	-0.2
3,973,091	-		MIT1002_03551	0.33	-0.4
3,973,128	-		MIT1002_03551	0.37	-0.5
3,973,194	-		MIT1002_03551	0.43	-0.5
3,973,215	+		MIT1002_03551	0.45	-1.1
3,973,231	-		MIT1002_03551	0.46	+0.2
3,973,335	-		MIT1002_03551	0.56	+0.7
3,973,335	-		MIT1002_03551	0.56	+0.3
3,973,335	-		MIT1002_03551	0.56	-3.0
3,973,342	+		MIT1002_03551	0.57	+0.5
3,973,368	-		MIT1002_03551	0.59	-0.9
3,973,398	+		MIT1002_03551	0.62	-1.6
3,973,398	+		MIT1002_03551	0.62	-0.9
3,973,411	-		MIT1002_03551	0.63	+0.3
3,973,448	-		MIT1002_03551	0.67	-1.7
3,973,630	+		MIT1002_03551	0.84	-0.5
3,973,722	+				+0.4
3,973,788	+				+0.1
3,973,788	-				-0.8
3,973,793	-				+0.7
3,973,827	+				-1.0
3,973,832	+				-0.2
3,973,877	-				-0.0
3,974,053	+		MIT1002_03552	0.15	-0.6
3,974,118	+		MIT1002_03552	0.19	-0.4
3,974,141	-		MIT1002_03552	0.20	-0.8
3,974,148	+		MIT1002_03552	0.20	-1.7
3,974,170	-		MIT1002_03552	0.22	-0.5
3,974,197	-		MIT1002_03552	0.23	+0.4
3,974,236	+		MIT1002_03552	0.25	-0.0
3,974,305	+		MIT1002_03552	0.29	-1.2
3,974,307	-		MIT1002_03552	0.30	-0.3
3,974,313	-		MIT1002_03552	0.30	+2.5
3,974,499	-		MIT1002_03552	0.41	-0.8
3,974,499	-		MIT1002_03552	0.41	+0.1
3,974,541	+		MIT1002_03552	0.43	-1.6
3,974,541	+		MIT1002_03552	0.43	-1.8
3,974,549	-		MIT1002_03552	0.44	-2.8
3,974,549	-		MIT1002_03552	0.44	-1.4
3,974,582	-		MIT1002_03552	0.45	-1.2
3,974,639	-		MIT1002_03552	0.49	-0.3
3,974,668	+		MIT1002_03552	0.50	+0.5
3,974,676	+		MIT1002_03552	0.51	+1.0
3,974,684	-		MIT1002_03552	0.51	-0.3
3,974,719	-		MIT1002_03552	0.53	-0.6
3,974,852	-		MIT1002_03552	0.61	+1.2
3,974,914	-		MIT1002_03552	0.65	-0.4
3,974,945	-		MIT1002_03552	0.66	-0.2
3,975,152	-		MIT1002_03552	0.78	-1.4
3,975,154	+		MIT1002_03552	0.79	+0.2
3,975,159	+		MIT1002_03552	0.79	+2.9
3,975,162	-		MIT1002_03552	0.79	+0.5
3,975,162	-		MIT1002_03552	0.79	+1.8
3,975,253	+		MIT1002_03552	0.84	-0.6
3,975,354	-				-0.7
3,975,390	+				+0.0
3,975,398	-				-1.0
3,975,398	-				+1.0
3,975,400	+				-0.0
3,975,473	-				+2.7
3,975,473	-				-0.1
3,975,578	-				-1.3
3,975,578	-				+0.2
3,975,685	+				+0.9
3,975,768	+				+0.6
3,975,773	+				-1.1
3,975,773	+				+0.6
3,975,795	+				+1.6
3,975,805	+				-0.8
3,975,813	-		MIT1002_03553	0.10	+0.1
3,975,833	+		MIT1002_03553	0.13	-0.3
3,975,857	+		MIT1002_03553	0.15	-0.6
3,976,254	-		MIT1002_03553	0.60	-0.7
3,976,282	+		MIT1002_03553	0.63	+0.1
3,976,318	-		MIT1002_03553	0.67	+0.6
3,976,349	+		MIT1002_03553	0.71	+3.3
3,976,364	+		MIT1002_03553	0.72	+0.4
3,976,369	+		MIT1002_03553	0.73	-1.4
3,976,431	-		MIT1002_03553	0.80	+0.4
3,976,478	+		MIT1002_03553	0.85	+0.4
3,976,486	-		MIT1002_03553	0.86	-0.7