Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03394

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
3,795,258	-		MIT1002_03393	0.28	+0.4
3,795,284	+		MIT1002_03393	0.30	+1.2
3,795,285	+		MIT1002_03393	0.30	-0.7
3,795,316	+		MIT1002_03393	0.32	+0.1
3,795,359	+		MIT1002_03393	0.36	-0.4
3,795,365	+		MIT1002_03393	0.36	-1.1
3,795,373	+		MIT1002_03393	0.37	+0.0
3,795,373	-		MIT1002_03393	0.37	+0.2
3,795,388	+		MIT1002_03393	0.38	-1.6
3,795,455	-		MIT1002_03393	0.43	+1.4
3,795,513	+		MIT1002_03393	0.48	-0.7
3,795,519	+		MIT1002_03393	0.48	+0.2
3,795,548	+		MIT1002_03393	0.50	-1.0
3,795,637	-		MIT1002_03393	0.57	+0.6
3,795,677	-		MIT1002_03393	0.60	-1.9
3,795,775	+		MIT1002_03393	0.68	+2.4
3,795,778	-		MIT1002_03393	0.68	+0.2
3,795,792	+		MIT1002_03393	0.69	+0.6
3,795,799	-		MIT1002_03393	0.70	+0.0
3,795,799	-		MIT1002_03393	0.70	-1.4
3,795,883	+		MIT1002_03393	0.76	+1.3
3,795,918	+		MIT1002_03393	0.79	+0.5
3,795,972	+		MIT1002_03393	0.83	+1.0
3,796,108	+				+0.3
3,796,151	+				+0.2
3,796,151	+				-0.5
3,796,159	-				-0.7
3,796,159	-				-0.3
3,796,187	+				-1.3
3,796,189	+				-0.8
3,796,198	+				-1.9
3,796,208	-				+0.0
3,796,259	+				+0.9
3,796,314	-				+0.5
3,796,314	-				-1.5
3,796,314	-				+1.5
3,796,470	+		MIT1002_03394	0.19	-0.4
3,796,478	-		MIT1002_03394	0.19	+0.3
3,796,480	+		MIT1002_03394	0.20	-0.1
3,796,568	-		MIT1002_03394	0.25	+0.5
3,796,574	+		MIT1002_03394	0.26	+1.0
3,796,575	+		MIT1002_03394	0.26	-1.2
3,796,620	+		MIT1002_03394	0.29	+0.1
3,796,620	+		MIT1002_03394	0.29	-0.4
3,796,628	-		MIT1002_03394	0.29	+1.0
3,796,628	-		MIT1002_03394	0.29	-1.2
3,796,744	+		MIT1002_03394	0.37	-0.1
3,796,752	-		MIT1002_03394	0.38	+0.2
3,796,820	-		MIT1002_03394	0.42	-1.8
3,796,887	+		MIT1002_03394	0.47	+0.4
3,796,889	-		MIT1002_03394	0.47	-2.0
3,796,895	-		MIT1002_03394	0.47	+0.8
3,796,900	-		MIT1002_03394	0.47	-0.6
3,796,919	+		MIT1002_03394	0.49	+0.2
3,796,947	+		MIT1002_03394	0.51	+0.2
3,796,947	+		MIT1002_03394	0.51	+0.7
3,796,979	+		MIT1002_03394	0.53	-0.2
3,797,020	+		MIT1002_03394	0.55	-1.4
3,797,028	-		MIT1002_03394	0.56	+3.0
3,797,028	-		MIT1002_03394	0.56	-0.7
3,797,125	-		MIT1002_03394	0.62	+1.3
3,797,209	+		MIT1002_03394	0.68	+0.3
3,797,219	+		MIT1002_03394	0.69	-0.9
3,797,256	-		MIT1002_03394	0.71	-1.6
3,797,261	+		MIT1002_03394	0.71	+0.9
3,797,261	+		MIT1002_03394	0.71	-0.4
3,797,261	+		MIT1002_03394	0.71	-0.6
3,797,261	+		MIT1002_03394	0.71	+2.8
3,797,261	-		MIT1002_03394	0.71	-0.6
3,797,269	-		MIT1002_03394	0.72	-0.1
3,797,269	-		MIT1002_03394	0.72	-1.5
3,797,269	-		MIT1002_03394	0.72	-2.0
3,797,269	-		MIT1002_03394	0.72	+0.9
3,797,269	-		MIT1002_03394	0.72	+1.0
3,797,271	+		MIT1002_03394	0.72	-1.3
3,797,348	+		MIT1002_03394	0.77	+0.9
3,797,505	+		MIT1002_03394	0.88	+1.6
3,797,550	+				+0.4
3,797,558	-				-0.4
3,797,558	-				+0.9
3,797,558	-				+0.1
3,797,597	+				+0.9
3,797,644	+				+0.1
3,797,685	-				-0.9
3,797,695	-				+2.4
3,797,723	+				-1.2
3,797,756	-				+0.2
3,797,789	+				-0.4
3,797,813	+				-1.1
3,797,890	+				+0.4
3,797,996	+				+0.1
3,798,019	+				-0.3
3,798,104	+		MIT1002_03395	0.11	+1.1
3,798,104	+		MIT1002_03395	0.11	-0.4
3,798,104	+		MIT1002_03395	0.11	-1.1
3,798,104	+		MIT1002_03395	0.11	-0.4
3,798,112	-		MIT1002_03395	0.11	+0.6
3,798,112	-		MIT1002_03395	0.11	-0.4
3,798,112	-		MIT1002_03395	0.11	-1.7
3,798,365	-		MIT1002_03395	0.18	-2.6
3,798,388	+		MIT1002_03395	0.19	-1.0
3,798,411	+		MIT1002_03395	0.20	-0.4
3,798,418	+		MIT1002_03395	0.20	+1.2
3,798,462	-		MIT1002_03395	0.21	-0.1
3,798,504	+		MIT1002_03395	0.22	-0.6
3,798,582	-		MIT1002_03395	0.25	+0.6
3,798,583	-		MIT1002_03395	0.25	+1.4
3,798,593	-		MIT1002_03395	0.25	-1.4
3,798,612	+		MIT1002_03395	0.26	+0.4
3,798,639	+		MIT1002_03395	0.26	+1.2