Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03134

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
3,488,773	-		MIT1002_03133	0.24	+0.3
3,488,814	+		MIT1002_03133	0.27	-1.0
3,488,886	-		MIT1002_03133	0.33	-0.0
3,488,941	+		MIT1002_03133	0.37	+0.0
3,488,949	-		MIT1002_03133	0.38	-2.7
3,489,030	-		MIT1002_03133	0.44	-0.6
3,489,030	-		MIT1002_03133	0.44	+1.7
3,489,032	+		MIT1002_03133	0.44	-0.9
3,489,032	+		MIT1002_03133	0.44	+0.5
3,489,032	+		MIT1002_03133	0.44	+0.8
3,489,032	+		MIT1002_03133	0.44	+0.0
3,489,032	+		MIT1002_03133	0.44	+0.3
3,489,040	-		MIT1002_03133	0.45	-1.7
3,489,105	-		MIT1002_03133	0.50	-1.2
3,489,241	+		MIT1002_03133	0.61	+1.9
3,489,338	+		MIT1002_03133	0.69	+0.0
3,489,346	-		MIT1002_03133	0.69	-0.1
3,489,592	+		MIT1002_03133	0.89	+0.1
3,489,592	+		MIT1002_03133	0.89	-2.1
3,489,592	+		MIT1002_03133	0.89	+1.1
3,489,592	+		MIT1002_03133	0.89	+2.1
3,489,592	+		MIT1002_03133	0.89	-0.1
3,489,600	-		MIT1002_03133	0.89	-1.0
3,489,600	-		MIT1002_03133	0.89	-0.2
3,489,600	-		MIT1002_03133	0.89	-0.2
3,489,600	-		MIT1002_03133	0.89	-0.1
3,489,612	-				-0.2
3,489,643	-				+0.1
3,489,659	+				+1.6
3,489,718	+				-1.0
3,489,767	-				-0.8
3,489,851	-				-0.2
3,489,908	-		MIT1002_03134	0.11	-0.3
3,489,918	-		MIT1002_03134	0.11	+0.2
3,490,006	+		MIT1002_03134	0.17	-0.6
3,490,009	-		MIT1002_03134	0.17	+1.0
3,490,016	+		MIT1002_03134	0.17	-1.2
3,490,016	+		MIT1002_03134	0.17	-0.7
3,490,016	+		MIT1002_03134	0.17	+0.7
3,490,016	+		MIT1002_03134	0.17	-0.0
3,490,016	+		MIT1002_03134	0.17	-0.0
3,490,024	-		MIT1002_03134	0.18	+1.5
3,490,024	-		MIT1002_03134	0.18	+0.6
3,490,024	-		MIT1002_03134	0.18	-2.0
3,490,024	-		MIT1002_03134	0.18	-0.2
3,490,059	+		MIT1002_03134	0.20	-0.8
3,490,068	-		MIT1002_03134	0.21	-0.8
3,490,113	-		MIT1002_03134	0.24	+0.4
3,490,180	-		MIT1002_03134	0.28	+0.2
3,490,209	-		MIT1002_03134	0.30	+0.2
3,490,210	+		MIT1002_03134	0.30	-0.4
3,490,304	+		MIT1002_03134	0.36	-0.2
3,490,317	-		MIT1002_03134	0.36	-1.3
3,490,374	+		MIT1002_03134	0.40	+0.3
3,490,374	+		MIT1002_03134	0.40	-0.7
3,490,374	+		MIT1002_03134	0.40	+0.0
3,490,382	-		MIT1002_03134	0.41	+0.6
3,490,382	-		MIT1002_03134	0.41	+0.2
3,490,382	-		MIT1002_03134	0.41	-0.8
3,490,433	-		MIT1002_03134	0.44	+0.3
3,490,440	-		MIT1002_03134	0.44	+0.9
3,490,475	+		MIT1002_03134	0.46	+1.5
3,490,483	-		MIT1002_03134	0.47	+1.2
3,490,550	-		MIT1002_03134	0.51	-1.5
3,490,556	+		MIT1002_03134	0.52	-0.6
3,490,573	+		MIT1002_03134	0.53	+0.4
3,490,586	+		MIT1002_03134	0.53	-1.3
3,490,594	+		MIT1002_03134	0.54	-0.0
3,490,611	-		MIT1002_03134	0.55	-0.3
3,490,646	-		MIT1002_03134	0.57	+1.0
3,490,667	+		MIT1002_03134	0.59	+0.0
3,490,675	-		MIT1002_03134	0.59	+0.0
3,490,771	+		MIT1002_03134	0.65	+0.2
3,490,771	+		MIT1002_03134	0.65	-0.1
3,490,779	-		MIT1002_03134	0.66	-0.3
3,490,812	+		MIT1002_03134	0.68	+1.2
3,490,820	-		MIT1002_03134	0.68	-0.1
3,490,820	-		MIT1002_03134	0.68	-0.5
3,490,865	+		MIT1002_03134	0.71	+1.0
3,490,868	-		MIT1002_03134	0.71	+0.6
3,490,892	+		MIT1002_03134	0.73	+1.1
3,490,892	+		MIT1002_03134	0.73	-0.4
3,490,900	-		MIT1002_03134	0.73	-0.1
3,490,911	+		MIT1002_03134	0.74	+1.4
3,490,932	-		MIT1002_03134	0.75	-0.8
3,490,942	-		MIT1002_03134	0.76	-1.0
3,491,001	+		MIT1002_03134	0.80	-1.8
3,491,038	-		MIT1002_03134	0.82	-0.0
3,491,045	+		MIT1002_03134	0.83	+1.1
3,491,090	-		MIT1002_03134	0.85	-0.6
3,491,111	+		MIT1002_03134	0.87	-0.5
3,491,193	-				-1.9
3,491,253	+				-0.4
3,491,261	-				+0.7
3,491,261	-				+0.5
3,491,422	-				-1.1
3,491,425	+				+0.4
3,491,425	+				+1.4
3,491,433	-				+1.9
3,491,433	-				+0.5
3,491,433	-				+0.5
3,491,433	-				-0.5
3,491,434	-				-1.2
3,491,439	+				+0.5
3,491,518	+				+1.0
3,491,523	+				-0.2
3,491,596	+		MIT1002_03135	0.10	-0.9
3,491,604	-		MIT1002_03135	0.11	+0.3
3,491,614	-		MIT1002_03135	0.11	-0.7
3,491,664	+		MIT1002_03135	0.14	-0.3
3,491,664	+		MIT1002_03135	0.14	+0.8
3,491,664	+		MIT1002_03135	0.14	-2.7
3,491,672	-		MIT1002_03135	0.15	-0.9
3,491,672	-		MIT1002_03135	0.15	-1.3
3,491,690	+		MIT1002_03135	0.16	+0.4
3,491,695	+		MIT1002_03135	0.16	-1.0
3,491,698	-		MIT1002_03135	0.16	-2.5
3,491,698	-		MIT1002_03135	0.16	-1.2
3,491,748	+		MIT1002_03135	0.19	+0.4
3,491,757	+		MIT1002_03135	0.20	-1.8
3,491,799	+		MIT1002_03135	0.22	+0.4
3,491,807	-		MIT1002_03135	0.23	+0.1
3,491,867	+		MIT1002_03135	0.26	-0.2
3,491,871	-		MIT1002_03135	0.26	-0.3
3,491,875	-		MIT1002_03135	0.27	-1.4
3,491,905	+		MIT1002_03135	0.28	+0.5
3,491,912	-		MIT1002_03135	0.29	+1.4
3,491,985	-		MIT1002_03135	0.33	-2.3
3,492,116	+		MIT1002_03135	0.41	+0.3
3,492,151	+		MIT1002_03135	0.43	+1.1
3,492,169	+		MIT1002_03135	0.44	-0.5
3,492,177	-		MIT1002_03135	0.44	-0.4
3,492,177	-		MIT1002_03135	0.44	+0.1
3,492,280	-		MIT1002_03135	0.50	+0.7
3,492,281	-		MIT1002_03135	0.50	-1.3
3,492,281	-		MIT1002_03135	0.50	+0.9
3,492,317	+		MIT1002_03135	0.52	+0.6