Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03055

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
3,409,239	+				-0.7
3,409,280	+				+0.5
3,409,291	-				-0.5
3,409,324	+				+0.0
3,409,422	+				+1.9
3,409,430	-		MIT1002_03054	0.11	-0.6
3,409,430	-		MIT1002_03054	0.11	+0.6
3,409,475	-		MIT1002_03054	0.17	+1.0
3,409,596	+		MIT1002_03054	0.34	-0.4
3,409,596	+		MIT1002_03054	0.34	-0.4
3,409,604	-		MIT1002_03054	0.35	+1.3
3,409,607	+		MIT1002_03054	0.35	-0.1
3,409,615	-		MIT1002_03054	0.36	-0.5
3,409,784	+		MIT1002_03054	0.60	-1.2
3,409,813	+		MIT1002_03054	0.64	+0.3
3,409,821	-		MIT1002_03054	0.65	-0.7
3,409,859	-		MIT1002_03054	0.70	+0.4
3,409,870	+		MIT1002_03054	0.71	+0.4
3,409,875	+		MIT1002_03054	0.72	-0.9
3,409,875	+		MIT1002_03054	0.72	-1.8
3,409,875	+		MIT1002_03054	0.72	+1.2
3,409,883	-		MIT1002_03054	0.73	+0.2
3,409,883	-		MIT1002_03054	0.73	+0.6
3,409,883	-		MIT1002_03054	0.73	-1.8
3,409,883	-		MIT1002_03054	0.73	+2.2
3,409,895	+		MIT1002_03054	0.75	+1.6
3,409,912	+		MIT1002_03054	0.77	+1.4
3,409,913	-		MIT1002_03054	0.77	+0.4
3,409,913	-		MIT1002_03054	0.77	+0.4
3,409,920	-		MIT1002_03054	0.78	+0.7
3,409,996	+		MIT1002_03054	0.89	+1.8
3,410,004	-		MIT1002_03054	0.90	-2.6
3,410,004	-		MIT1002_03054	0.90	-0.6
3,410,004	-		MIT1002_03054	0.90	-1.2
3,410,093	-				-0.1
3,410,093	-				-0.1
3,410,140	+				-0.7
3,410,148	-				-1.2
3,410,205	+				-0.7
3,410,238	+				-2.5
3,410,258	+				-0.8
3,410,258	+				-1.5
3,410,282	-				-1.1
3,410,322	-		MIT1002_03055	0.11	-1.2
3,410,374	-		MIT1002_03055	0.16	-1.4
3,410,374	-		MIT1002_03055	0.16	+0.4
3,410,381	-		MIT1002_03055	0.17	+0.0
3,410,455	+		MIT1002_03055	0.25	-2.1
3,410,471	-		MIT1002_03055	0.27	+0.0
3,410,700	+		MIT1002_03055	0.51	-1.9
3,410,700	+		MIT1002_03055	0.51	-2.7
3,410,700	+		MIT1002_03055	0.51	-0.8
3,410,700	+		MIT1002_03055	0.51	+0.4
3,410,700	+		MIT1002_03055	0.51	-0.4
3,410,700	+		MIT1002_03055	0.51	-0.6
3,410,700	+		MIT1002_03055	0.51	-1.0
3,410,700	+		MIT1002_03055	0.51	-2.9
3,410,700	+		MIT1002_03055	0.51	-0.4
3,410,708	-		MIT1002_03055	0.51	-1.4
3,410,708	-		MIT1002_03055	0.51	-1.8
3,410,708	-		MIT1002_03055	0.51	-0.4
3,410,708	-		MIT1002_03055	0.51	+0.0
3,410,708	-		MIT1002_03055	0.51	-1.8
3,410,708	-		MIT1002_03055	0.51	-1.2
3,410,728	+		MIT1002_03055	0.54	-1.3
3,410,819	-		MIT1002_03055	0.63	-1.1
3,410,877	+		MIT1002_03055	0.69	-0.4
3,410,887	-		MIT1002_03055	0.70	+0.0
3,410,905	-		MIT1002_03055	0.72	-1.7
3,410,912	+		MIT1002_03055	0.73	-0.8
3,410,938	+		MIT1002_03055	0.76	-0.4
3,410,978	-		MIT1002_03055	0.80	-0.2
3,411,031	+		MIT1002_03055	0.85	-2.0
3,411,134	+				+0.8
3,411,144	+				-0.3
3,411,184	+				+0.2
3,411,192	-				-1.7
3,411,197	-				-1.0
3,411,202	-				-0.7
3,411,259	+				+0.3
3,411,277	-				-0.4
3,411,410	+		MIT1002_03056	0.20	-0.8
3,411,428	+		MIT1002_03056	0.23	+0.8
3,411,459	+		MIT1002_03056	0.28	-0.2
3,411,484	+		MIT1002_03056	0.33	-0.2
3,411,606	+		MIT1002_03056	0.54	-1.2
3,411,606	+		MIT1002_03056	0.54	+1.0
3,411,606	+		MIT1002_03056	0.54	+0.4
3,411,606	+		MIT1002_03056	0.54	+1.6
3,411,680	+		MIT1002_03056	0.67	-1.9
3,411,699	+		MIT1002_03056	0.71	+1.0
3,411,782	+		MIT1002_03056	0.85	-1.1