Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03043

Experiment: monoculture; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 4
3,393,578	+		MIT1002_03042	0.20	+1.2
3,393,595	+		MIT1002_03042	0.22	-1.1
3,393,600	+		MIT1002_03042	0.22	-1.0
3,393,653	-		MIT1002_03042	0.27	+0.0
3,393,661	+		MIT1002_03042	0.28	-0.8
3,393,696	+		MIT1002_03042	0.31	-0.5
3,393,696	+		MIT1002_03042	0.31	-0.3
3,393,703	-		MIT1002_03042	0.32	-0.6
3,393,736	+		MIT1002_03042	0.35	-2.2
3,393,737	+		MIT1002_03042	0.35	+1.4
3,393,737	+		MIT1002_03042	0.35	-0.5
3,393,744	-		MIT1002_03042	0.36	-1.2
3,393,745	-		MIT1002_03042	0.36	+1.4
3,393,820	+		MIT1002_03042	0.43	-0.2
3,393,828	-		MIT1002_03042	0.43	+0.9
3,393,828	-		MIT1002_03042	0.43	-0.0
3,393,828	-		MIT1002_03042	0.43	-1.3
3,393,894	-		MIT1002_03042	0.49	-0.3
3,393,922	+		MIT1002_03042	0.52	-0.1
3,393,949	+		MIT1002_03042	0.55	+1.7
3,393,955	+		MIT1002_03042	0.55	+1.7
3,393,957	-		MIT1002_03042	0.55	+1.5
3,394,045	+		MIT1002_03042	0.63	+0.1
3,394,087	-		MIT1002_03042	0.67	-0.6
3,394,265	+		MIT1002_03042	0.84	+0.7
3,394,275	+		MIT1002_03042	0.85	+0.2
3,394,383	+				-0.4
3,394,450	-				-1.0
3,394,502	-				-1.3
3,394,544	+				+1.7
3,394,545	-				+1.0
3,394,561	-				+0.1
3,394,676	-		MIT1002_03043	0.20	+0.8
3,394,771	+		MIT1002_03043	0.33	-0.5
3,394,771	+		MIT1002_03043	0.33	-0.6
3,394,771	+		MIT1002_03043	0.33	+0.2
3,394,779	-		MIT1002_03043	0.34	-0.4
3,394,779	-		MIT1002_03043	0.34	-1.0
3,394,779	-		MIT1002_03043	0.34	-0.0
3,394,802	+		MIT1002_03043	0.37	-1.4
3,394,887	-		MIT1002_03043	0.48	-0.1
3,394,921	+		MIT1002_03043	0.53	-1.8
3,394,921	+		MIT1002_03043	0.53	+0.4
3,395,043	-		MIT1002_03043	0.69	-0.4
3,395,088	-		MIT1002_03043	0.75	-2.3
3,395,193	+		MIT1002_03043	0.89	+1.6
3,395,193	+		MIT1002_03043	0.89	+0.3
3,395,201	-				+0.6
3,395,332	+				+1.0
3,395,386	-				-0.1
3,395,402	+				+0.4
3,395,414	+				+1.0
3,395,422	-				+0.4
3,395,456	-				+2.1
3,395,535	-				-0.0
3,395,564	+				+0.0
3,395,570	-		MIT1002_03044	0.11	-0.2
3,395,600	-		MIT1002_03044	0.15	+0.1
3,395,605	+		MIT1002_03044	0.16	+0.8
3,395,605	+		MIT1002_03044	0.16	+0.0
3,395,605	+		MIT1002_03044	0.16	-0.4
3,395,605	+		MIT1002_03044	0.16	+0.0
3,395,633	-		MIT1002_03044	0.20	-0.3
3,395,635	+		MIT1002_03044	0.20	+0.2
3,395,643	-		MIT1002_03044	0.21	-1.5
3,395,645	-		MIT1002_03044	0.21	-0.8
3,395,650	+		MIT1002_03044	0.22	-1.4
3,395,653	-		MIT1002_03044	0.23	+0.1
3,395,672	+		MIT1002_03044	0.25	-1.0
3,395,680	-		MIT1002_03044	0.26	-0.3
3,395,745	+		MIT1002_03044	0.36	+0.7
3,395,750	+		MIT1002_03044	0.36	-1.3
3,395,755	+		MIT1002_03044	0.37	+1.4
3,395,770	+		MIT1002_03044	0.39	-0.3
3,395,785	+		MIT1002_03044	0.42	-0.5
3,395,793	-		MIT1002_03044	0.43	-1.2
3,395,824	+		MIT1002_03044	0.47	-1.5
3,395,934	+		MIT1002_03044	0.63	-0.1
3,395,934	+		MIT1002_03044	0.63	-0.7
3,395,935	-		MIT1002_03044	0.63	-0.2
3,395,942	-		MIT1002_03044	0.64	+1.1
3,395,956	+		MIT1002_03044	0.66	-0.1
3,395,964	-		MIT1002_03044	0.67	-0.2
3,395,994	-		MIT1002_03044	0.72	-2.2
3,396,037	-		MIT1002_03044	0.78	+1.2
3,396,048	-		MIT1002_03044	0.79	-0.5
3,396,049	+		MIT1002_03044	0.79	-0.4
3,396,049	+		MIT1002_03044	0.79	-1.3
3,396,049	+		MIT1002_03044	0.79	+0.2
3,396,049	+		MIT1002_03044	0.79	-0.8
3,396,057	-		MIT1002_03044	0.81	-0.8
3,396,138	+				-0.1
3,396,162	-				-1.1
3,396,206	+		MIT1002_03045	0.17	+0.4
3,396,214	-		MIT1002_03045	0.19	-2.5
3,396,234	+		MIT1002_03045	0.26	+1.0
3,396,242	-		MIT1002_03045	0.28	-1.4
3,396,254	-		MIT1002_03045	0.32	+0.6
3,396,261	+		MIT1002_03045	0.34	-1.0